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AB_3033_bin_60_scaffold_189

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AB_3033_bin_60_scaffold_189_1
AR10, Diapherotrites, DPANN, Archaea

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1..771
DNA (771bp) protein (257aa)
hypothetical protein
transmembrane_regions id=5241211 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_3033_bin_60_scaffold_189_2

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826..1650
DNA (825bp) protein (275aa)
nicotinate-nucleotide pyrophosphorylase carboxylating (EC:2.4.2.19)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] id=5240792 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000256|PIRNR:PIRNR006250}; EC=2.4.2.19 {ECO:0000256|PIRNR:PIRNR006250};; Quinolinate phosphoribosyltransferase [decarboxylating] {ECO:0000256|PIRNR:PIRNR006250}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_3033_bin_60_scaffold_189_3
Bacillus sp. TH008, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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1661..2230
DNA (570bp) protein (190aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1609979 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. TH008.;"
nicotinic acid mononucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Bacillus sonorensis L12 RepID=M5P4L4_9BACI
AB_3033_bin_60_scaffold_189_4
unknown

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2314..2586
DNA (273bp) protein (91aa)

This feature has no annotations

AB_3033_bin_60_scaffold_189_5
unknown

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2634..2774
DNA (141bp) protein (47aa)

This feature has no annotations

AB_3033_bin_60_scaffold_189_6

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2780..3694
DNA (915bp) protein (305aa)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42)
ilvE; branched-chain amino acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] id=5240909 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Marine sediment metagenome DNA, contig: S06H3_C00049 {ECO:0000313|EMBL:GAH92355.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
AB_3033_bin_60_scaffold_189_7
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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3980..5497
DNA (1518bp) protein (506aa)
2-isopropylmalate synthase id=4878529 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
2-isopropylmalate synthase
Tax=GWC2_Nitrospirae_56_14_curated
AB_3033_bin_60_scaffold_189_8
Methanocella conradii, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

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5507..7204
DNA (1698bp) protein (566aa)
ilvB; acetolactate synthase large subunit (EC:2.2.1.6)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1041930 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 /; HZ254).;"
Acetolactate synthase n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8C9_METCZ
AB_3033_bin_60_scaffold_189_9
CG_Woesearch_03, Woesearchaeota, Archaea

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7218..7730
DNA (513bp) protein (171aa)
acetolactate synthase n=1 Tax=Cohnella laeviribosi RepID=UPI00037CC048
Acetolactate synthase small subunit
Tax=CG_Woesearch_03
AB_3033_bin_60_scaffold_189_10
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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7796..8779
DNA (984bp) protein (328aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase id=3211146 bin=GWF2_Lentisphaerae_49_21 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
Tax=GWF2_Lentisphaerae_49_21_curated
AB_3033_bin_60_scaffold_189_11
Pyrococcus furiosus, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

8787..10415
DNA (1629bp) protein (543aa)
Dihydroxy-acid dehydratase {ECO:0000255|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000255|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000255|HAMAP-Rule:MF_00012};; TaxID=186497 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1).;"
Dihydroxy-acid dehydratase n=2 Tax=Pyrococcus furiosus RepID=ILVD_PYRFU
dihydroxy-acid dehydratase
AB_3033_bin_60_scaffold_189_12
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

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10426..11688
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit id=3491031 bin=GWC2_Nitrospirae_57_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
3-isopropylmalate dehydratase large subunit
Tax=GWC2_Nitrospirae_57_13_curated
AB_3033_bin_60_scaffold_189_13
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11685..12179
DNA (495bp) protein (165aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
leuD; 3-isopropylmalate dehydratase small subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Clostridium sp. CAG:167 RepID=R5VI40_9CLOT
AB_3033_bin_60_scaffold_189_14
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochatetes, Bacteria

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12179..13249
DNA (1071bp) protein (357aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E1I4_GEOLS
Tax=BJP_IG2069_Spirochaetales_48_31
AB_3033_bin_60_scaffold_189_15
unknown

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comp(13241..14299)
DNA (1059bp) protein (353aa)

This feature has no annotations

AB_3033_bin_60_scaffold_189_16
GWF2_OD1_45_11, Parcubacteria, Bacteria

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comp(14305..15342)
DNA (1038bp) protein (346aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Geobacillus sp. (strain Y412MC10) RepID=D3EF32_GEOS4
Phosphoribosylaminoimidazole synthetase {ECO:0000313|EMBL:KKT94316.1}; TaxID=1618973 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_45_11.;"
AB_3033_bin_60_scaffold_189_17
unknown

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15440..15889
DNA (450bp) protein (150aa)

This feature has no annotations

AB_3033_bin_60_scaffold_189_18
RLO_RIF03_38_15, RIF3, Bacteria

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16164..16820
DNA (657bp) protein (219aa)
transaldolase (EC:2.2.1.2)
transaldolase n=1 Tax=Desulfurispora thermophila RepID=UPI000378D6FE
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
AB_3033_bin_60_scaffold_189_19
AR10, Diapherotrites, DPANN, Archaea

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16831..17904
DNA (1074bp) protein (358aa)
pheA; chorismate mutase / prephenate dehydratase (EC:4.2.1.51 5.4.99.5)
pheA; bifunctional chorismate mutase/prephenate dehydratase (EC:4.2.1.51 5.4.99.5); K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51] id=5240912 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=AR10
AB_3033_bin_60_scaffold_189_20
CG_Elusi_03, Elusimicrobia, Bacteria

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17897..18712
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Fusobacterium sp. oral taxon 370 str. F0437 RepID=G6C0X3_9FUSO
hypothetical protein
Tax=CG_Elusi_03
AB_3033_bin_60_scaffold_189_21
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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18709..19653
DNA (945bp) protein (315aa)
Transketolase, pyridine binding domain protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1WQF2_ANEAE
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:ERI04523.1}; TaxID=649747 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
transketolase
AB_3033_bin_60_scaffold_189_22
CG_Omnitr_04, Omnitrophica, Bacteria

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19659..20672
DNA (1014bp) protein (338aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GGX3_9FIRM
Tax=CG_Omnitr_04
AB_3033_bin_60_scaffold_189_23
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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20677..21291
DNA (615bp) protein (205aa)
Alpha-ribazole phosphatase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QVX4_ACEAZ
alpha-ribazole phosphatase
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
AB_3033_bin_60_scaffold_189_24
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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21301..22572
DNA (1272bp) protein (424aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase id=1266178 bin=GWE1_Spirochaetes_32_154 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE1_Spirochaetes_32_154 organism_group=Spirochaetes
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
AB_3033_bin_60_scaffold_189_25
R_Chlamydiae_45_22, Chlamydiia, Chlamydiae, Bacteria

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22569..23090
DNA (522bp) protein (174aa)
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Eubacterium sp. CAG:274 RepID=R6P5Q3_9FIRM
Tax=RIFCSPLOWO2_02_FULL_Chlamydiae_45_22_curated
AB_3033_bin_60_scaffold_189_26

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23087..23752
DNA (666bp) protein (222aa)
3-dehydroquinate dehydratase I (EC:4.2.1.10)
3-dehydroquinate dehydratase, type I (EC:4.2.1.10); K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10] id=5240927 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
AB_3033_bin_60_scaffold_189_27
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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23749..24561
DNA (813bp) protein (271aa)
aroE1; hypothetical protein (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TCS9_DESML
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00179162}; TaxID=237368 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Scalindua.;" source="Candidatus Scalindua brodae.;"
AB_3033_bin_60_scaffold_189_28
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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24558..25625
DNA (1068bp) protein (356aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=639282 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC; 101012 / SSM1).;"
Chorismate synthase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PBX1_DEFDS
AB_3033_bin_60_scaffold_189_29
unknown

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comp(25693..25965)
DNA (273bp) protein (91aa)

This feature has no annotations

AB_3033_bin_60_scaffold_189_30

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comp(25962..27638)
DNA (1677bp) protein (559aa)
hypothetical protein
hypothetical protein id=5240677 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF59670.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
Displaying items 1-30 of 90 in total

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