ggKbase home page

Meg22_46_Bin_141_scaffold_7489

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Meg22_46_Bin_141_scaffold_7489_1
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(108..590)
-----------------
DNA (483bp)
protein (161aa)
Predicted archaeal holliday junction resolvase id=5800106 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
Tax=RBG_13_Pacearchaeota_36_9_curated
Meg22_46_Bin_141_scaffold_7489_2
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(679..2154)
-----------------
DNA (1476bp)
protein (492aa)
lysine--tRNA ligase n=1 Tax=SAR324 cluster bacterium SCGC AAA001-C10 RepID=UPI00028A0C2B id=5103293 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
lysine-tRNA ligase
Tax=CG_Pacearch_06
Meg22_46_Bin_141_scaffold_7489_3
RBG_13_Pacearchaeota_33_26_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(2208..2348)
-----------------
DNA (141bp)
protein (47aa)
Tax=RBG_13_Pacearchaeota_33_26_curated
Meg22_46_Bin_141_scaffold_7489_4
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(2417..2689)
-----------------
DNA (273bp)
protein (91aa)
Acylphosphatase n=1 Tax=uncultured bacterium RepID=K2ATH3_9BACT
acylphosphatase
Tax=RBG_16_Pacearchaeota_35_8_curated
Meg22_46_Bin_141_scaffold_7489_5
unknown

Not on your lists

comp(2824..3255)
-----------------
DNA (432bp)
protein (144aa)

This feature has no annotations

Meg22_46_Bin_141_scaffold_7489_6
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

3365..4234
-----------------
DNA (870bp)
protein (290aa)
Retroviral pol related endonuclease n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TH49_METAC
transposase
Tax=AR11
Meg22_46_Bin_141_scaffold_7489_7
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(4241..4948)
-----------------
DNA (708bp)
protein (236aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003615558
hypothetical protein
Tax=RBG_16_Pacearchaeota_35_8_curated
Meg22_46_Bin_141_scaffold_7489_trna_2
unknown

Not on your lists

comp(4968..5038)
-----------------
DNA (71bp)
transferRNA Val
Meg22_46_Bin_141_scaffold_7489_8

Not on your lists

5143..5577
-----------------
DNA (435bp)
protein (145aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|SAAS:SAAS00071038}; EC=3.6.1.23 {ECO:0000256|SAAS:SAAS00071036};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase n=1 Tax=Helicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 / 12198) RepID=D3UI37_HELM1
Meg22_46_Bin_141_scaffold_7489_9
unknown

Not on your lists

comp(5611..5808)
-----------------
DNA (198bp)
protein (66aa)

This feature has no annotations

Meg22_46_Bin_141_scaffold_7489_trna_1
unknown

Not on your lists

5861..5931
-----------------
DNA (71bp)
transferRNA Gly
Meg22_46_Bin_141_scaffold_7489_10
Parcubacteria bacterium GW2011_GWB1_46_8, Parcubacteria, Bacteria

Not on your lists

6008..6421
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU46299.1}; TaxID=1618880 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWB1_46_8.;"
hypothetical protein id=17485 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
Maf-like protein
Meg22_46_Bin_141_scaffold_7489_11
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(6693..8237)
-----------------
DNA (1545bp)
protein (515aa)
Dead box RNA helicase n=2 Tax=Methanococcoides burtonii RepID=Q12UP5_METBU
DEAD/DEAH box helicase-like protein
Tax=RBG_13_Pacearchaeota_36_9_curated
Meg22_46_Bin_141_scaffold_7489_12

Not on your lists

comp(8415..9155)
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN76040.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=5048280 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
Meg22_46_Bin_141_scaffold_7489_13
unknown

Not on your lists

9262..9408
-----------------
DNA (147bp)
protein (49aa)

This feature has no annotations

Meg22_46_Bin_141_scaffold_7489_14
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9576..10592
-----------------
DNA (1017bp)
protein (339aa)
Ribose-phosphate pyrophosphokinase {ECO:0000313|EMBL:CEN53443.1}; EC=2.7.6.1 {ECO:0000313|EMBL:CEN53443.1};; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=14426273 bin=bin1_lowGC species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin1_lowGC organism_group=Unknown_CP
prsA2; protein PrsA2 (EC:2.7.6.1)
Meg22_46_Bin_141_scaffold_7489_15
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(10855..12468)
-----------------
DNA (1614bp)
protein (538aa)
thermosome id=5043657 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Thermosome, chaperonin Cpn60/TCP-1
Tax=RBG_13_Pacearchaeota_36_9_curated
Meg22_46_Bin_141_scaffold_7489_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

12609..13166
-----------------
DNA (558bp)
protein (186aa)
Putative signal transduction protein n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VRB9_9EURY
inosine-5'-monophosphate dehydrogenase
Tax=RBG_13_Pacearchaeota_36_9_curated
Meg22_46_Bin_141_scaffold_7489_17
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

13244..13744
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000369275E
hypothetical protein
Tax=RBG_13_Pacearchaeota_36_9_curated
Meg22_46_Bin_141_scaffold_7489_18
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

13867..14073
-----------------
DNA (207bp)
protein (69aa)
Tax=CG_Pacearch_06
Displaying 20 items

View Taxonomy