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Meg22_46_Bin_231_scaffold_8478

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Meg22_46_Bin_231_scaffold_8478_1
unknown

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comp(107..319)
DNA (213bp) protein (71aa)

This feature has no annotations

Meg22_46_Bin_231_scaffold_8478_2
RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated, Falkowbacteria, Parcubacteria, Bacteria

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430..1458
DNA (1029bp) protein (343aa)
hypothetical protein id=5091414 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
Tax=RIFOXYD2_FULL_OD1_Falkowbacteria_34_120_curated
Meg22_46_Bin_231_scaffold_8478_3

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1524..2840
DNA (1317bp) protein (439aa)
Putative nucleotidyltransferase id=5799944 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61275.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
Meg22_46_Bin_231_scaffold_8478_4

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2899..3900
DNA (1002bp) protein (334aa)
OB-fold tRNA/helicase-type nucleic acid binding protein; K07466 replication factor A1 id=5046768 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor A1 {ECO:0000313|EMBL:KHO45956.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
OB-fold tRNA/helicase-type nucleic acid binding protein
Meg22_46_Bin_231_scaffold_8478_5
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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3906..4943
DNA (1038bp) protein (346aa)
DNA repair and recombination protein RadA n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YUF2_THEON
radA; DNA repair and recombination protein RadA
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1343739 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Palaeococcus.;" source="Palaeococcus pacificus DY20341.;"
Meg22_46_Bin_231_scaffold_8478_6
RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated, Magasanikbacteria, Parcubacteria, Bacteria

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comp(4940..5401)
DNA (462bp) protein (154aa)
coiled-coil 3..24 id=13489 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
Tax=RIFOXYD12_FULL_OD1_Magasanikbacteria_33_17_curated
Meg22_46_Bin_231_scaffold_8478_7
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(5403..6110)
DNA (708bp) protein (236aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.89 {ECO:0000256|HAMAP-Rule:MF_01139};; Undecaprenyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; Undecaprenyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01139}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 /; V24 S).;"
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYL2_METFV
Meg22_46_Bin_231_scaffold_8478_8
unknown

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comp(6111..6290)
DNA (180bp) protein (60aa)

This feature has no annotations

Meg22_46_Bin_231_scaffold_8478_9

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6327..7193
DNA (867bp) protein (289aa)
Peptidase A24A prepilin type IV n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GUF4_9EURY id=5103136 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AIF00785.1}; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_139_C07.;"
Peptidase A24A prepilin type IV
Meg22_46_Bin_231_scaffold_8478_10
unknown

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7243..7542
DNA (300bp) protein (100aa)

This feature has no annotations

Meg22_46_Bin_231_scaffold_8478_11

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comp(7539..8153)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376AB69
Hit-like protein involved in cell-cycle regulation {ECO:0000313|EMBL:KHO46464.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
histidine triad (HIT) protein
Meg22_46_Bin_231_scaffold_8478_12
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(8507..9874)
DNA (1368bp) protein (456aa)
cysS; Cysteine-tRNA ligase (EC:6.1.1.16)
Cysteinyl-tRNA ligase id=3544258 bin=GWA1_ZB2_49_26 species=unknown genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=RBG_16_Micrarchaeota_49_10_curated
Meg22_46_Bin_231_scaffold_8478_trna_1
unknown

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comp(9878..9951)
DNA (74bp)
transferRNA Cys
Meg22_46_Bin_231_scaffold_8478_13
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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comp(10083..11273)
DNA (1191bp) protein (397aa)
hypothetical protein
bmx:BMS_3256 putative selenocysteine lyase id=725881 bin=RAAC2_WWE3 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=RAAC2_WWE3 organism_group=WWE3
Tax=CG_Aenigma_01
Meg22_46_Bin_231_scaffold_8478_14
R_OD1_Falkowbacteria_39_17, Falkowbacteria, Parcubacteria, Bacteria

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comp(11270..12058)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037953BA
dienelactone hydrolase
Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_39_17_curated
Meg22_46_Bin_231_scaffold_8478_15
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(12048..12443)
DNA (396bp) protein (132aa)
A/G-specific DNA-adenine glycosylase n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9FM45_9CYAN
NUDIX hydrolase
Tax=CG_Pacearch_03
Meg22_46_Bin_231_scaffold_8478_16
Thermoplasmatales archaeon SCGC AB-540-F20, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(12440..12808)
DNA (369bp) protein (123aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TEN1_9EURY
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:EMR75228.1}; TaxID=1242866 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-540-F20.;"
nitrogen fixation protein, NifU
Meg22_46_Bin_231_scaffold_8478_17
Methanobrevibacter ruminantium, Methanobrevibacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12841..13251)
DNA (411bp) protein (137aa)
PP-loop family protein n=1 Tax=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) RepID=D3E1K2_METRM
PP-loop family protein
PP-loop family protein {ECO:0000313|EMBL:ADC46413.1}; TaxID=634498 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.;" source="Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM; 13430 / M1) (Methanobacterium ruminantium).;"
Displaying 18 items

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