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ERMGT100_2_curated_scaffold_3

Search features with annotation key words

Displaying items 61-90 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_3_61
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(70608..71675)
-----------------
DNA (1068bp)
protein (356aa)
Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0Z5X4_9CHLO id=5224765 bin=16ft_combo_ws3_JS1 species=Coccomyxa subellipsoidea genus=Coccomyxa taxon_order=unknown taxon_class=Trebouxiophyceae phylum=Chlorophyta tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_62
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71845..72348)
-----------------
DNA (504bp)
protein (168aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4E1D
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_43_22_curated
ERMGT100_2_curated_scaffold_3_63
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(72405..74285)
-----------------
DNA (1881bp)
protein (627aa)
Oligopeptide transporter, OPT family id=4733537 bin=GWA2_Elusimicrobia_51_34 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
OPT family oligopeptide transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_64
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

Not on your lists

74492..74920
-----------------
DNA (429bp)
protein (143aa)
Putative uncharacterized protein id=3070209 bin=GWF2_Planctomycetes_50_10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
ERMGT100_2_curated_scaffold_3_65
Desulfobulbus propionicus, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(74917..75615)
-----------------
DNA (699bp)
protein (233aa)
Trehalose 6-phosphate phosphatase {ECO:0000256|RuleBase:RU361117}; EC=3.1.3.12 {ECO:0000256|RuleBase:RU361117};; TaxID=577650 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3).;"
Trehalose-phosphatase n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RE17_DESPD
trehalose-phosphatase
ERMGT100_2_curated_scaffold_3_66
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

75799..77409
-----------------
DNA (1611bp)
protein (537aa)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) (EC:2.4.1.15)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=2 Tax=Rubrivivax RepID=I0HRR1_RUBGI id=5225752 bin=16ft_combo_ws3_JS1 species=unknown genus=Rubrivivax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_67
RBG_16_Zixibacteria_43_9_curated, Zixibacteria, Bacteria

Not on your lists

77409..78113
-----------------
DNA (705bp)
protein (235aa)
Conserved TM helix repeat-containing protein id=3234883 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
TM helix protein
Tax=RBG_16_Zixibacteria_43_9_curated
ERMGT100_2_curated_scaffold_3_68
unknown

Not on your lists

78110..78859
-----------------
DNA (750bp)
protein (250aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_3_69
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

78856..80130
-----------------
DNA (1275bp)
protein (425aa)
trehalose phosphorylase (EC:2.4.1.-)
Trehalose synthase id=4397911 bin=GWA2_Elusimicrobia_56_46 species=Caldisericum exile genus=Caldisericum taxon_order=Caldisericales taxon_class=Caldisericia phylum=Caldiserica tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
ERMGT100_2_curated_scaffold_3_70
unknown

Not on your lists

80215..81219
-----------------
DNA (1005bp)
protein (335aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_3_71
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(81245..82786)
-----------------
DNA (1542bp)
protein (514aa)
Subtilisin-like serine protease n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0FL16_9EURY id=5224768 bin=16ft_combo_ws3_JS1 species=Halorubrum hochstenium genus=Halorubrum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_72
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(82783..83439)
-----------------
DNA (657bp)
protein (219aa)
RNA polymerase, sigma-24 subunit, ECF subfamily protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C377D id=5224769 bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpoE; ECF subfamily RNA polymerase sigma-24 subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_73
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(83471..84205)
-----------------
DNA (735bp)
protein (245aa)
Orotidine 5'-phosphate decarboxylase n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YVE4_9SYNE id=5224770 bin=16ft_combo_ws3_JS1 species=Synechococcus sp. WH 5701 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
orotidine 5'-phosphate decarboxylase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_74
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(84202..85191)
-----------------
DNA (990bp)
protein (330aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.3.1)
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=PYRDB_GEOLS id=5224771 bin=16ft_combo_ws3_JS1 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_75
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(85188..86072)
-----------------
DNA (885bp)
protein (295aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RBA1_AMMDK id=5224772 bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
oxidoreductase FAD/NAD(P)-binding domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_76
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(86069..87820)
-----------------
DNA (1752bp)
protein (584aa)
Outer membrane assembly lipoprotein YfiO n=2 Tax=Rhodothermus marinus RepID=D0MIU6_RHOM4 id=5224773 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_77
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(87817..91035)
-----------------
DNA (3219bp)
protein (1073aa)
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9SBA5_9CYAN id=5224774 bin=16ft_combo_ws3_JS1 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_78
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(91038..92183)
-----------------
DNA (1146bp)
protein (382aa)
Carbamoyl-phosphate synthase small chain n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=CARA_PELCD id=5224775 bin=16ft_combo_ws3_JS1 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
carA; carbamoyl phosphate synthase small subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_79
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(92180..93481)
-----------------
DNA (1302bp)
protein (434aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PG62_9BACT id=5224776 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_80
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(93478..94500)
-----------------
DNA (1023bp)
protein (341aa)
Aspartate carbamoyltransferase n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SNI0_PLAL2 id=5224777 bin=16ft_combo_ws3_JS1 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aspartate carbamoyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_81
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

comp(94688..95179)
-----------------
DNA (492bp)
protein (164aa)
DoxX family protein id=4397742 bin=GWC2_Chloroflexi_73_18 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
DoxX family protein
Tax=RBG_16_RIF_CHLX_70_13_curated
ERMGT100_2_curated_scaffold_3_82
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(95176..96480)
-----------------
DNA (1305bp)
protein (435aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI00035D70FD
peptidase M20
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMGT100_2_curated_scaffold_3_83
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(96533..96973)
-----------------
DNA (441bp)
protein (147aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E842_GEOSM id=5225755 bin=16ft_combo_ws3_JS1 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_84
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

97205..98281
-----------------
DNA (1077bp)
protein (359aa)
Chalcone/stilbene synthase n=1 Tax=Desmospora sp. 8437 RepID=F5SK97_9BACL id=5225725 bin=16ft_combo_ws3_JS1 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
bcsA; chalcone synthase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_85
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

98281..98811
-----------------
DNA (531bp)
protein (177aa)
Isoprenylcysteine carboxyl methyltransferase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX27_RUBXD id=5225726 bin=16ft_combo_ws3_JS1 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
isoprenylcysteine carboxyl methyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_86
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

98861..101014
-----------------
DNA (2154bp)
protein (718aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037AD088
Peptidyl-dipeptidase Dcp {ECO:0000313|EMBL:GAO39262.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
peptidyl-dipeptidase Dcp
ERMGT100_2_curated_scaffold_3_87
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(101052..101963)
-----------------
DNA (912bp)
protein (304aa)
hypothetical protein GobsU_12882 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DDE id=5223865 bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
protein of unknown function DUF6 transmembrane
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_88
unknown

Not on your lists

102067..103437
-----------------
DNA (1371bp)
protein (457aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_3_89
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(103468..104016)
-----------------
DNA (549bp)
protein (183aa)
uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] id=24558789 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
phosphoribosyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_90
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

104266..105219
-----------------
DNA (954bp)
protein (318aa)
Putative uncharacterized protein id=24558790 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 61-90 of 131 in total

View Taxonomy