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ERMGT100_2_curated_scaffold_3

Search features with annotation key words

Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_3_1
unknown

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2..109
-----------------
DNA (108bp)
protein (36aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_3_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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288..3068
-----------------
DNA (2781bp)
protein (927aa)
Na-Ca exchanger/integrin-beta4 n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q10W91_TRIEI id=5224902 bin=16ft_combo_ws3_JS1 species=Trichodesmium erythraeum genus=Trichodesmium taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
IPT/TIG domain, FG-GAP repeat-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(3202..4098)
-----------------
DNA (897bp)
protein (299aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] id=24454752 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Bacillus coahuilensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
3-hydroxyacyl-CoA dehydrogenase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4109..5299)
-----------------
DNA (1191bp)
protein (397aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=24454753 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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5499..8486
-----------------
DNA (2988bp)
protein (996aa)
id=5224848 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_6
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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8551..9972
-----------------
DNA (1422bp)
protein (474aa)
Beta-lactamase domain protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ELW7_9CHLR
Beta-lactamase domain protein {ECO:0000313|EMBL:CCF85680.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
beta-lactamase domain-containing protein
ERMGT100_2_curated_scaffold_3_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(9983..11185)
-----------------
DNA (1203bp)
protein (401aa)
hypothetical protein id=24454755 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11182..12336)
-----------------
DNA (1155bp)
protein (385aa)
acyl-CoA dehydrogenase domain-containing protein id=24454756 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
acyl-CoA dehydrogenase domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_9
Cyanobium gracile, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(12467..13645)
-----------------
DNA (1179bp)
protein (393aa)
Uncharacterized protein n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9PAM4_CYAGP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY30180.1}; TaxID=292564 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium gracile (strain ATCC 27147 / PCC 6307).;"
ERMGT100_2_curated_scaffold_3_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(13680..14297)
-----------------
DNA (618bp)
protein (206aa)
NADPH-dependent FMN reductase n=2 Tax=Caldicellulosiruptor RepID=E4Q650_CALOW id=5224678 bin=16ft_combo_ws3_JS1 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
NADPH-dependent FMN reductase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(14353..15054)
-----------------
DNA (702bp)
protein (234aa)
Putative isobutyryl-CoA mutase small subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A940_GEMAT id=5224679 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative isobutyryl-CoA mutase small subunit
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(15128..15763)
-----------------
DNA (636bp)
protein (212aa)
id=5224680 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(15779..17542)
-----------------
DNA (1764bp)
protein (588aa)
methylmalonyl-CoA mutase large subunit (EC:5.4.99.2)
Methylmalonyl-CoA mutase, large subunit n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CJH0_DESK7 id=5224681 bin=16ft_combo_ws3_JS1 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(17794..18456)
-----------------
DNA (663bp)
protein (221aa)
Fibronectin type III domain-containing protein n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZMQ0_PAEAL id=5225466 bin=16ft_combo_ws3_JS1 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_15
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

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comp(18709..20025)
-----------------
DNA (1317bp)
protein (439aa)
hypothetical protein id=24533227 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hydrogenobacter thermophilus genus=Hydrogenobacter taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
ERMGT100_2_curated_scaffold_3_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(20022..20438)
-----------------
DNA (417bp)
protein (139aa)
hypothetical protein id=24458797 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
membrane protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

20868..21515
-----------------
DNA (648bp)
protein (216aa)
putative periplasmic or secreted lipoprotein id=24458792 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

21591..21998
-----------------
DNA (408bp)
protein (136aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2V2_THEOJ id=5223142 bin=16ft_combo_ws3_JS1 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
phoP1; alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_19
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22156..23478
-----------------
DNA (1323bp)
protein (441aa)
zraR; response regulator in two-component reguatory system (EBP family) id=24458794 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Ralstonia solanacearum genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
RSp1667; Fis family transcriptional regulator
Response regulator in two-component reguatory system (EBP family) {ECO:0000313|EMBL:CBJ41311.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum CMR15.;"
ERMGT100_2_curated_scaffold_3_20

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comp(23608..24663)
-----------------
DNA (1056bp)
protein (352aa)
transporter n=1 Tax=Marinobacterium stanieri RepID=UPI0002557C2E
Uncharacterized protein {ECO:0000313|EMBL:KKN95214.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
periplasmic protein
ERMGT100_2_curated_scaffold_3_21
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

25239..25388
-----------------
DNA (150bp)
protein (50aa)
Putative uncharacterized protein id=1905895 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
hypothetical protein
Tax=GWC2_Nitrospirae_57_9_curated
ERMGT100_2_curated_scaffold_3_22
unknown

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comp(25472..25582)
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_3_23
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25917..27371
-----------------
DNA (1455bp)
protein (485aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:AFZ31560.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AFZ31560.1};; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
rpfC; sensory box histidine kinase/response regulator id=24458795 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ERMGT100_2_curated_scaffold_3_24
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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27705..28277
-----------------
DNA (573bp)
protein (191aa)
alias=16ft_combo_ws3_scaffold_896_12 id=24458796 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_25

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28344..28559
-----------------
DNA (216bp)
protein (72aa)
hypothetical protein id=24458790 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48358.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ortholog of Bordetella pertussis (BX470248) BP2560
ERMGT100_2_curated_scaffold_3_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(28649..30628)
-----------------
DNA (1980bp)
protein (660aa)
glucuronoarabinoxylan endo-1,4-beta-xylanase id=24454798 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
alpha amylase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_3_27
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(30765..34016)
-----------------
DNA (3252bp)
protein (1084aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q027U1_SOLUE
hypothetical protein
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:ABJ82716.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
ERMGT100_2_curated_scaffold_3_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(34024..35847)
-----------------
DNA (1824bp)
protein (608aa)
Serine/threonine protein kinase n=1 Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WZ73_ACISM
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMGT100_2_curated_scaffold_3_29
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(35831..36436)
-----------------
DNA (606bp)
protein (202aa)
RNA polymerase sigma factor, sigma-70 family, ECF subfamily n=7 Tax=Rhodobacter capsulatus RepID=D5AN77_RHOCB
ECF family RNA polymerase sigma factor
Tax=RBG_16_Gammaproteobacteria_66_13_curated
ERMGT100_2_curated_scaffold_3_30
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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36644..37522
-----------------
DNA (879bp)
protein (293aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IHQ9_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF43591.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Displaying items 1-30 of 131 in total

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