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ERMGT500_2_curated_scaffold_358

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT500_2_curated_scaffold_358_1
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..115)
-----------------
DNA (114bp)
protein (38aa)
elongation factor Tu n=1 Tax=Psychromonas hadalis RepID=UPI0003B5CDAF
tuf; elongation factor Tu
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
ERMGT500_2_curated_scaffold_358_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(128..2248)
-----------------
DNA (2121bp)
protein (707aa)
Elongation factor G n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AIU5_9PROT
fusA; translation elongation factor 2 (EF-2/EF-G)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
ERMGT500_2_curated_scaffold_358_3
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2258..2728)
-----------------
DNA (471bp)
protein (157aa)
30S ribosomal protein S7 n=1 Tax=Janthinobacterium sp. CG3 RepID=UPI000349B3B8
rpsG; 30S ribosomal protein S7
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
ERMGT500_2_curated_scaffold_358_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2744..3121)
-----------------
DNA (378bp)
protein (126aa)
30S ribosomal protein S12 n=1 Tax=uncultured beta proteobacterium RepID=H5SH05_9PROT
30S ribosomal protein S12
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
ERMGT500_2_curated_scaffold_358_5
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3304..4419
-----------------
DNA (1116bp)
protein (372aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI00037FC31E
oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
ERMGT500_2_curated_scaffold_358_6
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4440..7775
-----------------
DNA (3336bp)
protein (1112aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000366D911
sensory box/GGDEF family protein
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
ERMGT500_2_curated_scaffold_358_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7778..8707)
-----------------
DNA (930bp)
protein (310aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax avenae RepID=UPI0002EC38DB
tctC; extracytoplasmic binding receptor
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
ERMGT500_2_curated_scaffold_358_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8830..13029)
-----------------
DNA (4200bp)
protein (1400aa)
rpoC; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AF34_9PROT
Tax=RBG_16_Betaproteobacteria_64_18_curated
ERMGT500_2_curated_scaffold_358_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13109..14464)
-----------------
DNA (1356bp)
protein (452aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9P3_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
ERMGT500_2_curated_scaffold_358_10
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(14428..17163)
-----------------
DNA (2736bp)
protein (912aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Thauera sp. 63 RepID=N6YDM6_9RHOO
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
ERMGT500_2_curated_scaffold_358_11
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17339..17722)
-----------------
DNA (384bp)
protein (128aa)
50S ribosomal protein L7/L12 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL7_NITMU
rplL; 50S ribosomal protein L7/L12
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
ERMGT500_2_curated_scaffold_358_12
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17809..18336)
-----------------
DNA (528bp)
protein (176aa)
50S ribosomal protein L10 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL10_NITMU
rplJ; 50S ribosomal protein L10
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
ERMGT500_2_curated_scaffold_358_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18547..19257)
-----------------
DNA (711bp)
protein (237aa)
50S ribosomal protein L1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DR80_9PROT
rplA; 50S ribosomal protein L1
Tax=RBG_16_Betaproteobacteria_64_18_curated
ERMGT500_2_curated_scaffold_358_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(19254..19688)
-----------------
DNA (435bp)
protein (145aa)
50S ribosomal protein L11 n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP54_SIDLE
50S ribosomal protein L11
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
ERMGT500_2_curated_scaffold_358_15
R_Betaproteobacteria_61_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19848..20258)
-----------------
DNA (411bp)
protein (137aa)
Transcription termination/antitermination protein NusG n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CP53_SIDLE
nusG; transcription antitermination protein NusG
Tax=RifCSPlowO2_12_Betaproteobacteria_61_14_curated
ERMGT500_2_curated_scaffold_358_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20261..20611)
-----------------
DNA (351bp)
protein (117aa)
Protein translocase subunit SecE n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QNZ1_AZOSU
secE; preprotein translocase subunit SecE
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
ERMGT500_2_curated_scaffold_358_trna_1
unknown

Not on your lists

comp(20750..20822)
-----------------
DNA (73bp)
transferRNA Trp
ERMGT500_2_curated_scaffold_358_17
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20843..22030)
-----------------
DNA (1188bp)
protein (396aa)
Elongation factor Tu n=1 Tax=Nitrosomonas sp. AL212 RepID=F9ZFE7_9PROT
translation elongation factor Tu
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Displaying 18 items

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