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ERMGT100_2_curated_scaffold_24

Search features with annotation key words

Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_24_31
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

46768..48171
-----------------
DNA (1404bp)
protein (468aa)
lpdA; dihydrolipoamide dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQD8_GRABC id=5224874 bin=16ft_combo_ws3_JS1 species=Granulibacter bethesdensis genus=Granulibacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_32
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

48182..49075
-----------------
DNA (894bp)
protein (298aa)
Beta-lactamase domain protein n=2 Tax=Rhodothermus marinus RepID=D0MJL8_RHOM4 id=5224872 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
beta-lactamase domain-containing protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_33
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

49097..49768
-----------------
DNA (672bp)
protein (224aa)
DedA n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CZ6_SOLUE id=5224871 bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_34
unknown

Not on your lists

comp(49789..50376)
-----------------
DNA (588bp)
protein (196aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_24_35
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

50549..51649
-----------------
DNA (1101bp)
protein (367aa)
Sugar ABC transporter n=2 Tax=Spirochaeta thermophila RepID=E0RNH2_SPITD id=5224869 bin=16ft_combo_ws3_JS1 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
sugar ABC transporter ATP-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_36
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

51659..52441
-----------------
DNA (783bp)
protein (261aa)
TonB family protein n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QWL9_CHLT3 id=5224109 bin=16ft_combo_ws3_JS1 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TonB family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_37
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

52700..53827
-----------------
DNA (1128bp)
protein (376aa)
HNH endonuclease id=24415228 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
HNH endonuclease
Tax=RBG_16_Acidobacteria_70_10_curated
ERMGT100_2_curated_scaffold_24_38
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(53861..57016)
-----------------
DNA (3156bp)
protein (1052aa)
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=24506371 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
AcrB/AcrD/AcrF family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_39
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(57013..58137)
-----------------
DNA (1125bp)
protein (375aa)
Putative Multidrug efflux transporter, membrane fusion protein n=1 Tax=Candidatus Nitrospira defluvii PF75_9BACT">RepID=D8PF75_9BACT id=5225502 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
probable RND efflux membrane fusion protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_40
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(58284..59078)
-----------------
DNA (795bp)
protein (265aa)
Methyltransferase type 11 n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BZQ7_9GAMM id=5225503 bin=16ft_combo_ws3_JS1 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
type 12 methyltransferase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_41
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(59110..60195)
-----------------
DNA (1086bp)
protein (362aa)
Macrolide export ATP-binding/permease protein MacB 1/2 n=1 Tax=Treponema azotonutricium ZAS-9 RepID=F5YCI4_TREAZ id=1247361 bin=RBG9 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=RBG9 organism_group=Chloroflexi
putative ABC transporter ATP-binding component
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ERMGT100_2_curated_scaffold_24_42
Brenneria sp. EniD312, Brenneria, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60199..61347)
-----------------
DNA (1149bp)
protein (383aa)
Putative uncharacterized protein n=1 Tax=Brenneria sp. EniD312 RepID=G7LQ15_9ENTR
Putative uncharacterized protein {ECO:0000313|EMBL:EHD22272.1}; TaxID=598467 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Brenneria.;" source="Brenneria sp. EniD312.;"
hypothetical protein
ERMGT100_2_curated_scaffold_24_43
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(61361..62617)
-----------------
DNA (1257bp)
protein (419aa)
ABC efflux pump, inner membrane subunit n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQI0_KORVE
efflux ABC transporter inner membrane protein
ABC efflux pump, inner membrane subunit {ECO:0000313|EMBL:ABF40870.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
ERMGT100_2_curated_scaffold_24_44
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(62622..63872)
-----------------
DNA (1251bp)
protein (417aa)
Iron permease FTR1 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQH9_KORVE
iron permease
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
ERMGT100_2_curated_scaffold_24_45
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

63982..65895
-----------------
DNA (1914bp)
protein (638aa)
Peptidase M56, BlaR1 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AL8_SOLUE id=5225505 bin=16ft_combo_ws3_JS1 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
peptidase M56, BlaR1
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_46
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65985..66554
-----------------
DNA (570bp)
protein (190aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002DD7C77
Uncharacterized protein {ECO:0000313|EMBL:KFE66379.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
hypothetical protein
ERMGT100_2_curated_scaffold_24_47
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(66595..67452)
-----------------
DNA (858bp)
protein (286aa)
fructose-1,6-bisphosphatase (EC:3.1.3.25)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR2_9BACT id=5225507 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_48
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(67395..70421)
-----------------
DNA (3027bp)
protein (1009aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLR2_9BACT id=5225507 bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_49
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

70515..72038
-----------------
DNA (1524bp)
protein (508aa)
Oligopeptide ABC transporter, substrate-binding protein n=15 Tax=Rhizobium RepID=B3PVI3_RHIE6 id=5225509 bin=16ft_combo_ws3_JS1 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
family 5 extracellular solute-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_50
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

72270..76958
-----------------
DNA (4689bp)
protein (1563aa)
FG-GAP repeat protein n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XWF1_9BACT id=5224034 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Cell surface protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_51
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

77014..78486
-----------------
DNA (1473bp)
protein (491aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RBP8_AMMDK id=5225512 bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_24_trna_1
unknown

Not on your lists

78546..78616
-----------------
DNA (71bp)
transferRNA Gln
ERMGT100_2_curated_scaffold_24_trna_2
unknown

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78720..78792
-----------------
DNA (73bp)
transferRNA Glu
ERMGT100_2_curated_scaffold_24_52
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78842..79882)
-----------------
DNA (1041bp)
protein (347aa)
Phage integrase protein (DNA breaking and rejoining enzyme) id=2964760 bin=GWA2_Elusimicrobia_69_24 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
phage integrase protein (DNA breaking and rejoining enzyme)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
ERMGT100_2_curated_scaffold_24_53
unknown

Not on your lists

comp(80283..80582)
-----------------
DNA (300bp)
protein (100aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_24_54
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

comp(80602..81039)
-----------------
DNA (438bp)
protein (146aa)
DNA repair protein RadC n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MEG5_9FIRM id=5223262 bin=16ft_combo_ws3_JS1 species=Pseudoramibacter alactolyticus genus=Pseudoramibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA repair protein RadC
Tax=RBG_16_Acidobacteria_64_8_curated
ERMGT100_2_curated_scaffold_24_55

Not on your lists

comp(81036..81881)
-----------------
DNA (846bp)
protein (282aa)
Smu18A n=1 Tax=uncultured organism RepID=Q0GNI6_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KKM25263.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ERMGT100_2_curated_scaffold_24_56
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

82344..84338
-----------------
DNA (1995bp)
protein (665aa)
DEAD/DEAH box helicase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SW04_NITWN
DEAD/DEAH box helicase
DEAD/DEAH box helicase {ECO:0000313|EMBL:ABA03537.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
ERMGT100_2_curated_scaffold_24_57
unknown

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comp(84342..84413)
-----------------
DNA (72bp)
protein (24aa)

This feature has no annotations

Displaying items 31-59 of 59 in total

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