ggKbase home page

ERMGT100_2_curated_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 41 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_71_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1..573)
DNA (573bp) protein (191aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.1.-)
ATP-dependent DNA helicase RecQ n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6Z6_GEMAT id=5225485 bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_2
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

735..1358
DNA (624bp) protein (208aa)
hypothetical protein id=24586866 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase S8/S53 subtilisin kexin sedolisin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_trna_1
unknown

Not on your lists

1517..1588
DNA (72bp)
transferRNA Gln
ERMGT100_2_curated_scaffold_71_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

1727..2653
DNA (927bp) protein (309aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] id=24516612 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


2724..3416
DNA (693bp) protein (231aa)
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 id=24516613 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
50S ribosomal protein L25
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3420..4001
DNA (582bp) protein (194aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFD5_9BACT id=5223241 bin=16ft_combo_ws3_JS1 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


3998..4351
DNA (354bp) protein (118aa)
30S ribosomal protein S6 n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KUE4_9SYNC id=5223242 bin=16ft_combo_ws3_JS1 species=Synechocystis sp. PCC 7509 genus=Synechocystis taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
SSU ribosomal protein S6P
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

4362..4763
DNA (402bp) protein (134aa)
ssb; Single-stranded DNA-binding protein; K03111 single-strand DNA-binding protein id=24516616 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
ssb; Single-stranded DNA-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


4788..5039
DNA (252bp) protein (84aa)
30S ribosomal protein S18 n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CK99_SYNLT id=5223244 bin=16ft_combo_ws3_JS1 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
rpsR; 30S ribosomal protein S18
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

5041..6012
DNA (972bp) protein (324aa)
id=5223245 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists


6028..6471
DNA (444bp) protein (148aa)
50S ribosomal protein L9 n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XY91_9BACT id=5223246 bin=16ft_combo_ws3_JS1 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
50S ribosomal protein L9
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_11
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

6468..7751
DNA (1284bp) protein (428aa)
PpiC-type peptidyl-prolyl cis-trans isomerase id=24516618 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
parvulin-like peptidyl-prolyl isomerase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_12
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7748..8260
DNA (513bp) protein (171aa)
Putative uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NZ75_GRAMM id=5223248 bin=16ft_combo_ws3_JS1 species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_13
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8257..9708
DNA (1452bp) protein (484aa)
Extracellular ligand-binding receptor n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NN49_MARHT id=5223249 bin=16ft_combo_ws3_JS1 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(9780..10811)
DNA (1032bp) protein (344aa)
HNH endonuclease id=24415228 bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
HNH endonuclease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ERMGT100_2_curated_scaffold_71_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10921..11625)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CPJ1_9BURK id=5223250 bin=16ft_combo_ws3_JS1 species=Herbaspirillum sp. GW103 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TonB-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_16
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11631..13883)
DNA (2253bp) protein (751aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS43_9FIRM id=5223251 bin=16ft_combo_ws3_JS1 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
N-acetylmuramoyl-L-alanine amidase
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

14082..15287
DNA (1206bp) protein (402aa)
Branched-chain amino acid ABC transporter, amino acid-binding protein n=3 Tax=Myxococcus RepID=J1SYD1_9DELT id=5223252 bin=16ft_combo_ws3_JS1 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ethanolamine utilization protein EutJ
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_18
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

15318..16220
DNA (903bp) protein (301aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LL15_CHLTF id=5223253 bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
inner-membrane translocator
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_19
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

16220..17200
DNA (981bp) protein (327aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=24553770 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
inner-membrane translocator
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_20
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17197..17997
DNA (801bp) protein (267aa)
amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein id=24553769 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
amino acid ABC transporter ATP-binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_21
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

17994..18707
DNA (714bp) protein (238aa)
ABC transporter related protein n=6 Tax=Pelosinus fermentans RepID=I8RHV9_9FIRM id=5223256 bin=16ft_combo_ws3_JS1 species=Pelosinus fermentans genus=Pelosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter-like protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_22
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

18867..21008
DNA (2142bp) protein (714aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V2J4_TERSS id=5223833 bin=16ft_combo_ws3_JS1 species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_23
unknown

Not on your lists

21178..21636
DNA (459bp) protein (153aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_71_24
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

22077..22640
DNA (564bp) protein (188aa)
hypothetical protein id=7718677 bin=BACIGN_2 species=Flavobacterium sp. F52 genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
protein of unknown function DUF1572
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
ERMGT100_2_curated_scaffold_71_25
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

22862..24280
DNA (1419bp) protein (473aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKP9_THEM7 id=5223257 bin=16ft_combo_ws3_JS1 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_26
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

24283..27867
DNA (3585bp) protein (1195aa)
Chromosome partition protein Smc n=2 Tax=Rhodothermus marinus RepID=D0MFL5_RHOM4 id=5223258 bin=16ft_combo_ws3_JS1 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
chromosome segregation protein SMC
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_27
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

27920..28819
DNA (900bp) protein (300aa)
Signal recognition particle receptor FtsY n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RCX0_AMMDK id=5223259 bin=16ft_combo_ws3_JS1 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
signal recognition particle-docking protein FtsY
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_28
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(28816..29688)
DNA (873bp) protein (291aa)
id=5223261 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_71_29
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

29929..30543
DNA (615bp) protein (205aa)
DNA repair protein RadC n=1 Tax=Pseudoramibacter alactolyticus ATCC 23263 RepID=E6MEG5_9FIRM id=5223262 bin=16ft_combo_ws3_JS1 species=Pseudoramibacter alactolyticus genus=Pseudoramibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
DNA repair protein RadC
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 1-30 of 41 in total

View Taxonomy