ggKbase home page

ERMGT800_2_curated_scaffold_462

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT800_2_curated_scaffold_462_1
unknown

Not on your lists

comp(2..121)
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

ERMGT800_2_curated_scaffold_462_2
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(130..1092)
-----------------
DNA (963bp)
protein (321aa)
Oligopeptide transport system permease protein AppB id=1884068 bin=GWD2_Nitrospirae-related_57_8 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
ABC transporter permease
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
ERMGT800_2_curated_scaffold_462_3
GWC2_Nitrospirae_57_9_curated, Nitrospirae, Bacteria

Not on your lists

comp(1210..2823)
-----------------
DNA (1614bp)
protein (538aa)
Peptide ABC transporter, periplasmic peptide-binding lipoprotein id=4911570 bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptide-binding protein
Tax=GWC2_Nitrospirae_57_9_curated
ERMGT800_2_curated_scaffold_462_4
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

comp(2873..4399)
-----------------
DNA (1527bp)
protein (509aa)
id=1884066 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
ERMGT800_2_curated_scaffold_462_5
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4396..5562)
-----------------
DNA (1167bp)
protein (389aa)
WD40 domain protein beta Propeller id=4736577 bin=GWC2_Nitrospirae_57_13 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
WD40-like beta Propeller containing protein
Tax=GWC2_Nitrospirae_57_13_curated
ERMGT800_2_curated_scaffold_462_6
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(5582..8209)
-----------------
DNA (2628bp)
protein (876aa)
id=4736578 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=GWC2_Nitrospirae_57_13_curated
ERMGT800_2_curated_scaffold_462_7
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(8206..8646)
-----------------
DNA (441bp)
protein (147aa)
id=2103040 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=GWC2_Nitrospirae_57_13_curated
ERMGT800_2_curated_scaffold_462_8
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9087..10523)
-----------------
DNA (1437bp)
protein (479aa)
Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XJM2_9CHRO
diguanylate cyclase with PAS/PAC and GAF sensors
Diguanylate cyclase with PAS/PAC and GAF sensors {ECO:0000313|EMBL:AFZ32289.1}; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 7428.;"
ERMGT800_2_curated_scaffold_462_9
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10825..12774
-----------------
DNA (1950bp)
protein (650aa)
fadD; long-chain acyl-CoA synthetase (EC:6.2.1.3)
Long-chain acyl-CoA synthetase protein {ECO:0000313|EMBL:ADJ64066.1}; EC=6.2.1.3 {ECO:0000313|EMBL:ADJ64066.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
Long-chain acyl-CoA synthetase protein n=1 Tax=Herbaspirillum seropedicae (strain SmR1) RepID=D8IWP6_HERSS
ERMGT800_2_curated_scaffold_462_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12800..13588
-----------------
DNA (789bp)
protein (263aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Janthinobacterium lividum RepID=UPI00028995EE
ABC transporter ATP-binding protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
ERMGT800_2_curated_scaffold_462_11
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13590..14483
-----------------
DNA (894bp)
protein (298aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QK79_AZOSU
branched-chain amino acid ABC-type transport system, permease component
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:AEV25512.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
ERMGT800_2_curated_scaffold_462_12
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14492..15598
-----------------
DNA (1107bp)
protein (369aa)
ABC-type transporter, permease component: HAAT family n=2 Tax=Burkholderiaceae RepID=Q0KEY2_CUPNH
h16_A0288; ABC transporter permease
ABC-type transporter, permease component: HAAT family {ECO:0000313|EMBL:CAJ91439.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
ERMGT800_2_curated_scaffold_462_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15705..16721
-----------------
DNA (1017bp)
protein (339aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QK81_AZOSU
branched-chain amino acid ABC transporter periplasmic protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
Displaying 13 items

View Taxonomy