ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_14452

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_14452_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1435)
DNA (1434bp) protein (478aa)
Putative FAD binding domain protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured marine microorganism HF4000_ANIW141A21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
FAD linked oxidase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_14452_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1502..2815)
DNA (1314bp) protein (438aa)
Magnesium transporter Tax=Anaeromyxobacter RepID=B4UGH7_ANASK
magnesium transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_14452_3
unknown

Not on your lists

comp(2956..3396)
DNA (441bp) protein (147aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_14452_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3622..4488
DNA (867bp) protein (289aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Alcanivorax pacificus genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
protein of unknown function DUF6 transmembrane
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM4_65_b1_redo_sep16_scaffold_14452_5
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4637..5332)
DNA (696bp) protein (232aa)
Rhomboid family protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
rhomboid family protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_14452_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5408..6109)
DNA (702bp) protein (234aa)
ABC transporter, ATP-binding protein bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_14452_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6096..6881)
DNA (786bp) protein (262aa)
ABC transporter related bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative branched-chain amino acid ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_14452_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6883..8019)
DNA (1137bp) protein (379aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein bin=bin3_NC10 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_14452_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7980..8954)
DNA (975bp) protein (325aa)
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein bin=bin3_NC10 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
branched-chain amino acid ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_14452_10
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9152..10726
DNA (1575bp) protein (525aa)
AsmA family protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_14452_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10750..12117)
DNA (1368bp) protein (456aa)
ribonuclease BN; K07058 membrane protein bin=bin3_NC10 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
ribonuclease BN
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_14452_12
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12300..13637
DNA (1338bp) protein (446aa)
amino acid transporter bin=bin7_NC10_sister species=Streptomyces cattleya genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
amino acid transporter
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_14452_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(13660..14241)
DNA (582bp) protein (194aa)
Phosphoglycerate mutase Tax=Shewanella loihica (strain ATCC BAA-1088 / PV-4) RepID=A3QB80_SHELP
Phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:AHG88922.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_14452_14
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14284..14679)
DNA (396bp) protein (132aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C52CC
Uncharacterized protein {ECO:0000313|EMBL:EDY19876.1}; species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Displaying 14 items

View Taxonomy