ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_2188

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2188_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..378
DNA (378bp) protein (126aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2188_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(386..1810)
DNA (1425bp) protein (475aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidase M48 Ste24p
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2188_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1924..4386
DNA (2463bp) protein (821aa)
hypothetical protein Tax=candidate division OP9 bacterium OP9-cSCG RepID=UPI00037F5244
peptidase S16, lon-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_2188_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4714..5787)
DNA (1074bp) protein (358aa)
Peptidase S1C, Do bin=GWD2_Deltaproteobacteria_55_8 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
protease Do
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_2188_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5884..6684
DNA (801bp) protein (267aa)
Short-chain dehydrogenase/reductase SDR bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
3-hydroxyacyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2188_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6770..7345
DNA (576bp) protein (192aa)
Unsaturated acyl-CoA hydratase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
enoyl-CoA hydratase/isomerase
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_2188_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7345..7563
DNA (219bp) protein (73aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Unsaturated acyl-CoA hydratase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Amycolatopsis taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_2188_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7575..8720
DNA (1146bp) protein (382aa)
Acyl-CoA dehydrogenases bin=GWD2_Deltaproteobacteria_55_8 species=uncultured nuHF2 cluster bacterium HF0500_39O04 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
acyl-CoA dehydrogenase
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_2188_9
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8800..9957
DNA (1158bp) protein (386aa)
short-chain specific acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase, short-chain specific bin=GWD2_Deltaproteobacteria_55_8 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2188_10
RBG_16_Chloroflexi_51_9_curated, Chloroflexi, Bacteria

Not on your lists

comp(9954..11474)
DNA (1521bp) protein (507aa)
Cobyric acid synthase Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KLC6_9FIRM
cobyric acid synthase CobQ
Tax=RBG_16_Chloroflexi_51_9_curated
PLM4_65_b1_redo_sep16_scaffold_2188_11
Smithella sp. SCADC, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11526..12335)
DNA (810bp) protein (270aa)
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K8N3_HALHC
Uncharacterized protein {ECO:0000313|EMBL:KFO67268.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SCADC.;"
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
PLM4_65_b1_redo_sep16_scaffold_2188_12
Candidatus Desulforudis audaxviator, Candidatus Desulforudis, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12337..13314)
DNA (978bp) protein (326aa)
Transport system permease protein Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I4F0_DESAP
transport system permease
Transport system permease protein {ECO:0000313|EMBL:ACA59827.1}; Flags: Precursor;; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Candidatus Desulforudis.;" source="Desulforudis audaxviator (strain MP104C).;"
PLM4_65_b1_redo_sep16_scaffold_2188_13
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

Not on your lists

comp(13335..14279)
DNA (945bp) protein (315aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000377CD04
ABC-type Fe3+-hydroxamate transport system, periplasmic component
Tax=RIFOXYC2_FULL_RIF01_39_67_curated
PLM4_65_b1_redo_sep16_scaffold_2188_14
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14280..16319)
DNA (2040bp) protein (680aa)
TonB-dependent siderophore receptor bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
tonb-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2188_15
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16701..17489)
DNA (789bp) protein (263aa)
Predicted protein bin=GWD2_Deltaproteobacteria_55_8 species=Oxalobacter formigenes genus=Oxalobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TonB family protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_2188_16
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17810..18685)
DNA (876bp) protein (292aa)
Conserved hypothetical membrane protein, auxin efflux carrier family bin=GWC2_Deltaproteobacteria_55_46 species=uncultured archaeon genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
auxin efflux carrier
Tax=GWC2_Deltaproteobacteria_55_46b_curated
PLM4_65_b1_redo_sep16_scaffold_2188_17
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18711..19412)
DNA (702bp) protein (234aa)
Cobalamin synthase bin=GWD2_Deltaproteobacteria_55_8 species=Dethiosulfovibrio peptidovorans genus=Dethiosulfovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
cobalamin 5'-phosphate synthase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM4_65_b1_redo_sep16_scaffold_2188_18
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19652..21460
DNA (1809bp) protein (603aa)
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 18 items

View Taxonomy