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PLM4_65_b1_redo_sep16_scaffold_2286

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2286_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..443)
DNA (441bp) protein (147aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI0003796776
xylose isomerase-like TIM barrel domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(524..1129)
DNA (606bp) protein (202aa)
Putative uncharacterized protein bin=GWC2_CP_Nitrospirae-rel_42_7 species=Polysphondylium pallidum genus=Polysphondylium taxon_order=Dictyosteliida taxon_class=unknown phylum=unknown tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hydrolase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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1301..2074
DNA (774bp) protein (258aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Short chain enoyl-CoA hydratase bin=GWA2_Ignavibacteria_55_11 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2091..2870
DNA (780bp) protein (260aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
Short chain enoyl-CoA hydratase Enoyl-CoA hydratase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJX9_THEM7
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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2951..3817
DNA (867bp) protein (289aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157)
hypothetical protein Tax=Alicyclobacillus pohliae RepID=UPI0003630795
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3804..4550
DNA (747bp) protein (249aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxyacyl-CoA dehydrogenase bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_2286_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4547..5749
DNA (1203bp) protein (401aa)
beta-ketoadipyl CoA thiolase (EC:2.3.1.174)
acyltransferase bin=GWD2_Deltaproteobacteria_55_8 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_2286_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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5938..8691
DNA (2754bp) protein (918aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8702..9001
DNA (300bp) protein (100aa)
Putative uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_2286_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9122..11206
DNA (2085bp) protein (695aa)
Ribonuclease R bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rnr; exoribonuclease R
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM4_65_b1_redo_sep16_scaffold_2286_11
unknown

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comp(11129..11575)
DNA (447bp) protein (149aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2286_12
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

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comp(11866..13827)
DNA (1962bp) protein (654aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WUL2_9NOST
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:AFZ23898.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cylindrospermum stagnale PCC 7417.;"
PLM4_65_b1_redo_sep16_scaffold_2286_13
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14181..15089)
DNA (909bp) protein (303aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037BB677
Uncharacterized protein {ECO:0000313|EMBL:ETX02403.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
putative hydroxyacid oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_2286_14
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

comp(15171..15662)
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4KYG8_9DELT
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
PLM4_65_b1_redo_sep16_scaffold_2286_15
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15801..16691
DNA (891bp) protein (297aa)
Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
PLM4_65_b1_redo_sep16_scaffold_2286_16
unknown

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comp(16783..17043)
DNA (261bp) protein (87aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2286_17
unknown

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comp(17101..17361)
DNA (261bp) protein (87aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2286_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17527..17829)
DNA (303bp) protein (101aa)
membrane protein Tax=Variovorax paradoxus RepID=UPI000372A9E8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50112.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
PLM4_65_b1_redo_sep16_scaffold_2286_19
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18412..18837)
DNA (426bp) protein (142aa)
CBS domain containing membrane protein bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_2286_20
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18982..20196)
DNA (1215bp) protein (405aa)
ABC transporter, membrane protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter membrane protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_2286_21
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20338..21000)
DNA (663bp) protein (221aa)
ABC transporter ATP-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ybbA; transporter subunit: ATP-binding component of ABC superfamily
Tax=GWD2_Deltaproteobacteria_55_8_curated
Displaying 21 items

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