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PLM4_90_b2_sep16_scaffold_97

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_97_1
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1..666
DNA (666bp) protein (222aa)
Electron transfer flavoprotein alpha-subunit bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
electron transfer flavoprotein alpha-subunit
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_2
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1027..1797
DNA (771bp) protein (257aa)
Phosphate ABC transporter, ATPase subunit Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RD19_AMMDK
phosphate ABC transporter ATPase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_3
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1807..2679
DNA (873bp) protein (291aa)
Phosphate binding protein Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG5_CLOPH
phosphate binding protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_4
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2676..3530
DNA (855bp) protein (285aa)
Phosphate ABC transporter, inner membrane subunit PstC Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG6_CLOPH
phosphate ABC transporter, inner membrane subunit PstC
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_5
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3530..4369
DNA (840bp) protein (280aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
phosphate ABC transporter, inner membrane subunit PstA
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_6
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4379..5140
DNA (762bp) protein (254aa)
ABC transporter related Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRG8_CLOPH
ABC transporter
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_7
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5159..5848
DNA (690bp) protein (230aa)
PhoU family transcriptional regulator Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B7A572
phoU; phosphate transport system protein PhoU
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_8
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6012..6389
DNA (378bp) protein (126aa)
Phosphotyrosine protein phosphatase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LTF6_SYNAS
phosphotyrosine protein phosphatase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_9
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6594..7265
DNA (672bp) protein (224aa)
Isochorismatase hydrolase Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FKY2_DESAA
isochorismatase hydrolase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_10
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7331..7624
DNA (294bp) protein (98aa)
Ribonucleoside-diphosphate reductase Tax=Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) RepID=F4A2A5_MAHA5
ribonucleoside-diphosphate reductase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_11
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7612..8874
DNA (1263bp) protein (421aa)
Mg/Co/Ni transporter MgtE domain protein bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
Mg2+/Co2+ transporter
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_97_12
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8889..10154
DNA (1266bp) protein (422aa)
Nramp family metal ion transport protein bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
manganese transporter NRAMP
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_13
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10224..10928
DNA (705bp) protein (235aa)
SNARE associated Golgi protein-like protein Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJA3_DESAR
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_90_b2_sep16_scaffold_97_14
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10935..11594
DNA (660bp) protein (220aa)
dedA family protein; K03975 membrane-associated protein bin=bin1_lowGC species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
dedA family protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_15
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11709..12413
DNA (705bp) protein (235aa)
Hypothetical conserved protein Tax=uncultured Acidobacteria bacterium RepID=H5SFD8_9BACT
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_16
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12493..13923)
DNA (1431bp) protein (477aa)
Betaine aldehyde dehydrogenase bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
aldehyde dehydrogenase
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_17
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13920..14903)
DNA (984bp) protein (328aa)
fucA; fuculose-1-phosphate aldolase (EC:4.1.2.17)
Class II aldolase/adducin family protein bin=GWF2_OP3_38_59 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_18
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14900..15370)
DNA (471bp) protein (157aa)
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_19
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15361..16266)
DNA (906bp) protein (302aa)
Methylthioribose-1-phosphate isomerase bin=GWF2_OP3_43_52 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
eif; initiation factor eIF-2B subunit alpha
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_20
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16266..16700)
DNA (435bp) protein (145aa)
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_21
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16697..17446)
DNA (750bp) protein (250aa)
Uridine phosphorylase bin=GWF2_OP3_43_52 species=Clostridium sp. D5 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
purine or other phosphorylase family 1
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_22
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17449..18372)
DNA (924bp) protein (308aa)
Putative uncharacterized protein bin=GWA2_OP3_53_43 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
amidohydrolase 2
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_b2_sep16_scaffold_97_23
RIFOXYB2_FULL_WOR_2_38_16_curated, WOR-2, Bacteria

Not on your lists

comp(18379..19845)
DNA (1467bp) protein (489aa)
Fe-S oxidoreductase bin=GWF2_OP3_43_52 species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
radical SAM domain-containing protein
Tax=RIFOXYB2_FULL_WOR_2_38_16_curated
PLM4_90_b2_sep16_scaffold_97_24
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19865..20278)
DNA (414bp) protein (138aa)
id=3984339 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_97_25
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20280..21053)
DNA (774bp) protein (258aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
3-ketoacyl-(acyl-carrier-protein) reductase bin=GWC2_OP3-like_45_7 species=Pedobacter agri genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 25 items

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