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PLM4_90_b2_sep16_scaffold_223

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_223_1
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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1..456
DNA (456bp) protein (152aa)
Elongation factor Tu Tax=Nitrospina gracilis 3/211 RepID=M1YYG8_9BACT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
elongation factor Tu
PLM4_90_b2_sep16_scaffold_223_trna_1
unknown

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672..745
DNA (74bp)
transferRNA Trp
PLM4_90_b2_sep16_scaffold_223_2
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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919..1014
DNA (96bp) protein (32aa)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_3
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1055..1618
DNA (564bp) protein (188aa)
Transcription antitermination protein nusG bin=GWC2_Deltaproteobacteria_42_51 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
NusG antitermination factor
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1642..2070
DNA (429bp) protein (143aa)
50S ribosomal protein L11 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A9W3_THEID
50S ribosomal protein L11
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_5
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2082..2780
DNA (699bp) protein (233aa)
50S ribosomal protein L1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CE50_DESTA
ribosomal protein L1
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2822..3343
DNA (522bp) protein (174aa)
50S ribosomal protein L10 Tax=Syntrophus aciditrophicus (strain SB) RepID=RL10_SYNAS
50S ribosomal protein L10
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_7
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3377..3766
DNA (390bp) protein (130aa)
50S ribosomal protein L7/L12 Tax=Syntrophus aciditrophicus (strain SB) RepID=RL7_SYNAS
50S ribosomal protein L7/L12
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_8
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3894..8081
DNA (4188bp) protein (1396aa)
DNA-directed RNA polymerase subunit beta Tax=Geobacter sulfurreducens RepID=RPOB_GEOSL
DNA-directed RNA polymerase subunit beta
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_9
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8101..12258
DNA (4158bp) protein (1386aa)
DNA-directed RNA polymerase subunit beta' bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
DNA-directed RNA polymerase subunit beta'
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(12255..13022)
DNA (768bp) protein (256aa)
putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) (EC:1.14.11.16)
Putative aspartyl/asparaginyl beta-hydroxylase (Aspartate beta-hydroxylase) (Peptide-aspartate beta-dioxygenase) Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QKP7_DESAH
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_11
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13048..13614)
DNA (567bp) protein (189aa)
Peptidoglycan-associated lipoprotein Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QJP8_DESB2
peptidoglycan-associated lipoprotein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_12
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13652..14959)
DNA (1308bp) protein (436aa)
Protein TolB Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDC0_GEOUR
WD40 domain-containing protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_13
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15103..15924)
DNA (822bp) protein (274aa)
LysR family transcriptional regulator Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036D169A
LysR family transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_223_14
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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16079..17008
DNA (930bp) protein (310aa)
Putative uncharacterized protein bin=GWF2_Bacteroidetes_41_61 species=Acinetobacter guillouiae genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 15 items

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