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PLM4_90_b2_sep16_scaffold_1141

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_1141_1
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..139)
DNA (138bp) protein (46aa)
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_2
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(307..945)
DNA (639bp) protein (213aa)
rare lipoprotein A; K03642 rare lipoprotein A bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
rare lipoprotein A
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_3
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(976..2010)
DNA (1035bp) protein (345aa)
Radical SAM superfamily protein bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
radical SAM protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2013..2780)
DNA (768bp) protein (256aa)
rnc; ribonuclease III (EC:3.1.26.3); K03685 ribonuclease III [EC:3.1.26.3] bin=ACD73 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=ACD73 organism_group=Proteobacteria organism_desc=Unknown
RNAse III (EC:3.1.26.3)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_5
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3206..3625
DNA (420bp) protein (140aa)
id=1940964 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3741..4925)
DNA (1185bp) protein (395aa)
LysM domain protein Tax=delta proteobacterium NaphS2 RepID=D8EWZ2_9DELT
lytic transglycosylase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_7
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5059..5331)
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHF4_9BACT
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_8
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5404..5895)
DNA (492bp) protein (164aa)
Uncharacterized protein bin=GWF2_Syntrophobacterales_56_9 species=Methanolobus psychrophilus genus=Methanolobus taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_9
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6521..7570)
DNA (1050bp) protein (350aa)
tRNA modification GTPase MnmE Tax=Caloramator australicus RC3 RepID=I7KVK7_9CLOT
mnmE; tRNA modification GTPase TrmE
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_10
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7931..8608)
DNA (678bp) protein (226aa)
Single-stranded nucleic acid binding R3H domain protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLH4_SYNFM
single-stranded nucleic acid binding R3H domain-containing protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_11
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8621..10294)
DNA (1674bp) protein (558aa)
Membrane protein insertase YidC bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_12
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10552..10938)
DNA (387bp) protein (129aa)
ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component Tax=uncultured Acidobacteria bacterium RepID=H5SCK3_9BACT
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_13
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11385..13073
DNA (1689bp) protein (563aa)
sfu:Sfum_2687 formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
formate--tetrahydrofolate ligase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_14
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13192..13923)
DNA (732bp) protein (244aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX Tax=Desulfovibrio vulgaris RepID=THYX_DESVH
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_15
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14076..15215
DNA (1140bp) protein (380aa)
3-oxoacyl-(acyl-carrier-protein) synthase 2 (EC:2.3.1.179)
hypothetical protein Tax=Orenia marismortui RepID=UPI00036AFB3B
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_16
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15269..15952)
DNA (684bp) protein (228aa)
Porphobilinogen deaminase bin=GWD2_Nitrospirae-related_57_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hemC; porphobilinogen deaminase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_17
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15949..16179)
DNA (231bp) protein (77aa)
Porphobilinogen deaminase bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hydroxymethylbilane synthase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_18
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16486..17820
DNA (1335bp) protein (445aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9FYL1_SORC5
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_19
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17986..18411
DNA (426bp) protein (142aa)
hypothetical protein Tax=Cloacimonetes bacterium SCGC AAA252-N05 RepID=UPI000374CD2F
sulfurtransferase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b2_sep16_scaffold_1141_20
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18460..19368
DNA (909bp) protein (303aa)
hypothetical protein Tax=Aminicenantes RepID=UPI000371894E
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_21
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19365..19910
DNA (546bp) protein (182aa)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_b2_sep16_scaffold_1141_22
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19894..20370
DNA (477bp) protein (159aa)
Uncharacterized protein bin=GWC2_Nitrospirae-rel_56_14 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 22 items

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