ggKbase home page

PLM4_90_b2_sep16_scaffold_2748

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_2748_1
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

141..1073
DNA (933bp) protein (311aa)
Antibiotic transport system ATP-binding protein bin=GWF2_Ignavibacteria_33_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
ABC transporter, ATP-binding protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_2748_2
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1070..1912
DNA (843bp) protein (281aa)
ial:IALB_0950 hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
membrane protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_2748_3
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1909..2613
DNA (705bp) protein (235aa)
Uncharacterized protein bin=GWF2_Melioribacter_38_21 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_2748_4
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2702..4483)
DNA (1782bp) protein (594aa)
Putative NADH-quinone oxidoreductase subunit M Tax=uncultured archaeon RepID=D1JBG7_9ARCH
NADH/ubiquinone/plastoquinone
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_5
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4476..4682)
DNA (207bp) protein (69aa)
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_6
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4689..5090)
DNA (402bp) protein (134aa)
NADH/Ubiquinone/plastoquinone (Complex I) bin=GWC2_Syntrophus__56_31 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
NADH/ubiquinone/plastoquinone
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_7
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5087..5992)
DNA (906bp) protein (302aa)
Putative uncharacterized protein bin=GWD2_Nitrospirae-related_57_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
monovalent cation/H+ antiporter subunit D
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_8

Not on your lists

comp(6011..7072)
DNA (1062bp) protein (354aa)
Marine sediment metagenome DNA, contig: S01H1_S14330 {ECO:0000313|EMBL:GAG01002.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NADH dehydrogenase/oxidoreductase bin=GWF2_Nitrospirae_44_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
NADH/ubiquinone/plastoquinone (complex i)
PLM4_90_b2_sep16_scaffold_2748_9
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7235..7603)
DNA (369bp) protein (123aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L bin=GWF2_Nitrospirae_44_13 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mnhC; Na(+)/H(+) anitporter subunit MhnC
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_10
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7587..8090)
DNA (504bp) protein (168aa)
Putative monovalent cation/H+ antiporter subunit B bin=GWF2_Nitrospirae_44_13 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mnhB; Na(+)/H(+) anitporter subunit MhnB
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_11
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8326..8622)
DNA (297bp) protein (99aa)
Conserved uncharacterized protein, associated with Mnh complex bin=GWF2_Nitrospirae_44_13 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
cation:proton antiporter
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_2748_12
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8568..8804)
DNA (237bp) protein (79aa)
Monovalent cation/proton antiporter, MnhG/PhaG subunit bin=GWD2_Nitrospirae-related_57_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
phaG; monovalent cation/H+ antiporter subunit G
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b2_sep16_scaffold_2748_13
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8900..9166)
DNA (267bp) protein (89aa)
MnhF: Na(+)/H(+) anitporter, subunit F (Mnh complex subunit F) bin=GWF2_Nitrospirae_44_13 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
mnhF; Na(+)/H(+) anitporter subunit MhnF
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b2_sep16_scaffold_2748_14
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9168..9653)
DNA (486bp) protein (162aa)
Na+/H+ ion antiporter subunit bin=GWC2_Nitrospirae_57_13 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
cation antiporter
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b2_sep16_scaffold_2748_15
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9781..10428)
DNA (648bp) protein (216aa)
Potassium uptake protein bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
potassium uptake protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_90_b2_sep16_scaffold_2748_16
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10546..10989)
DNA (444bp) protein (148aa)
Potassium uptake protein bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
potassium uptake protein
Tax=RBG_16_Deltaproteobacteria_48_10_curated
Displaying 16 items

View Taxonomy