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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_10494
Species: RBG_16_Deltaproteobacteria_49_23_curated (60%)
5 3813 bp 45.45 13.45 71.05
PLM4_90_b2_sep16_scaffold_9664
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 4607 bp 45.21 8.56 94.36
PLM4_90_b2_sep16_scaffold_2330
Class: Deltaproteobacteria (100%)
5 5552 bp 51.28 12.51 90.02
PLM4_90_b2_sep16_scaffold_6098
Class: Deltaproteobacteria (80%)
5 3538 bp 45.31 20.65 82.67
PLM4_90_b2_sep16_scaffold_5981
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 4201 bp 47.77 16.64 78.48
PLM4_90_b2_sep16_scaffold_5218
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 4391 bp 51.40 12.40 81.64
PLM4_90_b2_sep16_scaffold_8643
Species: RBG_16_Deltaproteobacteria_50_11_curated (60%)
5 3288 bp 51.55 12.18 95.07
PLM4_90_b2_sep16_scaffold_4606 5 4058 bp 48.30 9.20 67.72
PLM4_90_b2_sep16_scaffold_17975
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 3302 bp 47.49 9.09 83.86
PLM4_90_b2_sep16_scaffold_6880
Class: Deltaproteobacteria (80%)
5 3340 bp 45.75 13.74 73.83
PLM4_90_b2_sep16_scaffold_4608
Class: Deltaproteobacteria (80%)
5 4537 bp 47.98 14.51 91.32
PLM4_90_b2_sep16_scaffold_4100
Class: Deltaproteobacteria (100%)
5 4292 bp 52.03 9.12 81.50
PLM4_90_b2_sep16_scaffold_2862
Class: Deltaproteobacteria (100%)
5 5032 bp 53.04 12.85 83.35
PLM4_90_b2_sep16_scaffold_8143
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 5828 bp 49.28 13.25 90.91
PLM4_90_b2_sep16_scaffold_12031
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3577 bp 47.22 10.36 89.07
PLM4_90_b2_sep16_scaffold_6377
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4756 bp 46.95 12.36 48.95
PLM4_90_b2_sep16_scaffold_18602
Class: Deltaproteobacteria (80%)
5 3098 bp 44.61 12.49 68.27
PLM4_90_b2_sep16_scaffold_9948
Class: Deltaproteobacteria (80%)
5 4949 bp 46.03 18.31 66.26
PLM4_90_b2_sep16_scaffold_2356
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 5526 bp 46.51 17.54 89.90
PLM4_90_b2_sep16_scaffold_28232
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3342 bp 49.70 8.53 93.18
PLM4_90_b2_sep16_scaffold_9440
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 5464 bp 48.96 20.37 88.29
PLM4_90_b2_sep16_scaffold_10785
Domain: Bacteria (60%)
5 5185 bp 49.28 12.50 77.18
PLM4_90_b2_sep16_scaffold_4881
Class: Deltaproteobacteria (100%)
5 3947 bp 45.65 8.78 88.85
PLM4_90_b2_sep16_scaffold_18610
Class: Deltaproteobacteria (60%)
5 3261 bp 49.19 10.12 79.67
PLM4_90_b2_sep16_scaffold_4371
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4155 bp 45.75 13.29 74.66
PLM4_90_b2_sep16_scaffold_1855
Class: Deltaproteobacteria (60%)
5 6162 bp 52.55 11.12 84.66
PLM4_90_b2_sep16_scaffold_8160
Class: Deltaproteobacteria (60%)
5 3061 bp 43.03 9.70 100.46
PLM4_90_b2_sep16_scaffold_6905
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 4341 bp 45.40 13.79 73.53
PLM4_90_b2_sep16_scaffold_3011
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 4919 bp 47.35 10.37 58.91
PLM4_90_b2_sep16_scaffold_4381
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4152 bp 48.96 19.00 83.31
PLM4_90_b2_sep16_scaffold_5766
Class: Deltaproteobacteria (80%)
5 5473 bp 51.07 8.99 59.58
PLM4_90_b2_sep16_scaffold_7558
Order: Desulfuromonadales (60%)
5 3183 bp 49.80 10.13 70.88
PLM4_90_b2_sep16_scaffold_6398
Class: Deltaproteobacteria (100%)
5 4282 bp 49.11 12.65 91.36
PLM4_90_b2_sep16_scaffold_11179
Class: Deltaproteobacteria (80%)
5 3097 bp 49.37 9.49 88.34
PLM4_90_b2_sep16_scaffold_7574
Class: Deltaproteobacteria (60%)
5 3180 bp 54.40 5.99 89.06
PLM4_90_b2_sep16_scaffold_9215
Class: Deltaproteobacteria (50%)
4 3844 bp 50.03 6.79 96.70
PLM4_90_b2_sep16_scaffold_5017
Class: Deltaproteobacteria (100%)
4 3899 bp 48.14 10.89 94.10
PLM4_90_b2_sep16_scaffold_4658
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 4036 bp 47.27 15.31 82.80
PLM4_90_b2_sep16_scaffold_3036
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 4904 bp 49.12 17.86 82.22
PLM4_90_b2_sep16_scaffold_13340
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3654 bp 46.20 14.53 73.56
PLM4_90_b2_sep16_scaffold_17523
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
4 3236 bp 49.72 6.95 78.34
PLM4_90_b2_sep16_scaffold_6942
Phylum: Proteobacteria (50%)
4 3327 bp 44.51 13.89 71.78
PLM4_90_b2_sep16_scaffold_4416
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 4137 bp 47.45 16.72 77.30
PLM4_90_b2_sep16_scaffold_24794
Class: Deltaproteobacteria (50%)
4 4005 bp 50.01 14.19 71.39
PLM4_90_b2_sep16_scaffold_7089
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3862 bp 45.78 16.47 68.90
PLM4_90_b2_sep16_scaffold_7601
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 4665 bp 49.43 13.09 88.04
PLM4_90_b2_sep16_scaffold_7616
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3173 bp 48.41 17.16 92.75
PLM4_90_b2_sep16_scaffold_7105
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3288 bp 47.35 14.60 89.32
PLM4_90_b2_sep16_scaffold_23754
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3341 bp 48.58 10.87 76.06
PLM4_90_b2_sep16_scaffold_5314
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3788 bp 47.81 9.42 94.88
Displaying items 351-400 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.