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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 401-450 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_7365
Class: Deltaproteobacteria (50%)
4 4053 bp 47.92 10.81 68.84
PLM4_90_b2_sep16_scaffold_3078
Class: Deltaproteobacteria (100%)
4 4874 bp 47.99 17.60 91.40
PLM4_90_b2_sep16_scaffold_30398
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3317 bp 47.57 12.03 66.48
PLM4_90_b2_sep16_scaffold_17815
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3103 bp 49.53 10.34 64.78
PLM4_90_b2_sep16_scaffold_4448
Class: Deltaproteobacteria (100%)
4 4121 bp 47.80 17.51 84.37
PLM4_90_b2_sep16_scaffold_7626
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 4499 bp 46.61 18.67 82.49
PLM4_90_b2_sep16_scaffold_21021
Phylum: Proteobacteria (50%)
4 3202 bp 49.38 13.82 82.82
PLM4_90_b2_sep16_scaffold_5852
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 3613 bp 44.34 9.05 90.92
PLM4_90_b2_sep16_scaffold_7900
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3799 bp 44.96 8.69 86.55
PLM4_90_b2_sep16_scaffold_5087
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3875 bp 47.17 11.88 80.05
PLM4_90_b2_sep16_scaffold_5345
Species: RBG_13_Deltaproteobacteria_52_11_curated (50%)
4 3780 bp 47.01 8.25 82.38
PLM4_90_b2_sep16_scaffold_8001
Class: Deltaproteobacteria (75%)
4 3091 bp 48.04 10.29 80.75
PLM4_90_b2_sep16_scaffold_4985
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3910 bp 49.34 16.30 93.38
PLM4_90_b2_sep16_scaffold_4477
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
4 4110 bp 46.93 9.64 76.93
PLM4_90_b2_sep16_scaffold_10639
Species: R_Deltaproteobacteria_42_39 (50%)
4 3873 bp 48.54 13.94 91.79
PLM4_90_b2_sep16_scaffold_6242
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3498 bp 45.68 10.16 70.67
PLM4_90_b2_sep16_scaffold_7915
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3524 bp 50.60 13.41 91.00
PLM4_90_b2_sep16_scaffold_26293
Class: Deltaproteobacteria (50%)
4 3207 bp 44.84 7.62 79.14
PLM4_90_b2_sep16_scaffold_6758
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 5322 bp 46.71 13.42 87.15
PLM4_90_b2_sep16_scaffold_13428
Species: RBG_13_Deltaproteobacteria_53_10_curated (75%)
4 3074 bp 52.15 13.42 91.74
PLM4_90_b2_sep16_scaffold_17348
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 3751 bp 48.97 9.00 76.78
PLM4_90_b2_sep16_scaffold_16589
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 4241 bp 45.67 15.28 81.28
PLM4_90_b2_sep16_scaffold_7928
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3688 bp 47.97 19.73 86.55
PLM4_90_b2_sep16_scaffold_5113
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
4 3865 bp 47.37 15.95 74.44
PLM4_90_b2_sep16_scaffold_5632
Domain: Bacteria (100%)
4 3681 bp 47.57 7.70 88.83
PLM4_90_b2_sep16_scaffold_4762
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3997 bp 50.34 13.13 97.87
PLM4_90_b2_sep16_scaffold_3402
Class: Deltaproteobacteria (75%)
4 5367 bp 51.56 16.99 84.52
PLM4_90_b2_sep16_scaffold_19650
Species: GWC2_Nitrospirae_56_14_curated (50%)
4 3969 bp 49.23 8.16 75.36
PLM4_90_b2_sep16_scaffold_7947
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 4268 bp 50.91 9.03 88.78
PLM4_90_b2_sep16_scaffold_23572
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3087 bp 49.08 15.21 90.28
PLM4_90_b2_sep16_scaffold_5901
Species: RBG_13_Deltaproteobacteria_47_9_curated (75%)
4 3597 bp 49.60 14.39 86.74
PLM4_90_b2_sep16_scaffold_4773
Species: RBG_13_Deltaproteobacteria_53_10_curated (75%)
4 3991 bp 53.85 8.08 98.25
PLM4_90_b2_sep16_scaffold_8562
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3851 bp 47.75 11.72 84.37
PLM4_90_b2_sep16_scaffold_17637
Species: RBG_16_Chloroflexi_50_9_curated (75%)
4 3210 bp 50.90 11.07 86.82
PLM4_90_b2_sep16_scaffold_6800
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 4515 bp 48.88 12.86 77.34
PLM4_90_b2_sep16_scaffold_6802
Class: Deltaproteobacteria (75%)
4 3358 bp 46.69 8.53 73.88
PLM4_90_b2_sep16_scaffold_7708
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3152 bp 47.11 9.66 88.13
PLM4_90_b2_sep16_scaffold_14305
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3966 bp 54.64 7.53 87.29
PLM4_90_b2_sep16_scaffold_15740
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3906 bp 49.90 11.56 88.40
PLM4_90_b2_sep16_scaffold_13990
Species: Desulfococcus oleovorans (50%)
4 3236 bp 51.64 8.71 91.32
PLM4_90_b2_sep16_scaffold_7209
Species: BJP_IG2069_Desfulfarculales_53_13 (75%)
4 5976 bp 51.59 15.06 89.91
PLM4_90_b2_sep16_scaffold_7725
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3148 bp 47.24 14.01 82.62
PLM4_90_b2_sep16_scaffold_16139
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3073 bp 48.39 15.28 89.62
PLM4_90_b2_sep16_scaffold_7475
Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)
4 3203 bp 52.45 8.29 97.50
PLM4_90_b2_sep16_scaffold_4043
Species: BJP_IG2069_Desfulfarculales_53_13 (75%)
4 4324 bp 52.91 9.85 91.17
PLM4_90_b2_sep16_scaffold_8084
Class: Deltaproteobacteria (100%)
4 3074 bp 51.59 23.08 78.66
PLM4_90_b2_sep16_scaffold_3446
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 4628 bp 50.11 13.74 89.33
PLM4_90_b2_sep16_scaffold_8598
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 5185 bp 46.13 19.30 84.19
PLM4_90_b2_sep16_scaffold_5689
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3659 bp 47.53 12.83 76.33
PLM4_90_b2_sep16_scaffold_5437
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 5105 bp 46.95 13.13 88.80
Displaying items 401-450 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.