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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 501-550 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_2962
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 4950 bp 46.79 8.36 97.45
PLM4_90_b2_sep16_scaffold_7636
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 3169 bp 47.84 15.00 88.80
PLM4_90_b2_sep16_scaffold_6224
Class: Deltaproteobacteria (100%)
3 3504 bp 44.63 16.27 80.31
PLM4_90_b2_sep16_scaffold_6994
Class: Deltaproteobacteria (100%)
3 3314 bp 49.58 11.81 79.57
PLM4_90_b2_sep16_scaffold_11262
Species: RBG_13_Deltaproteobacteria_47_9_curated (66.67%)
3 3299 bp 48.71 12.28 83.21
PLM4_90_b2_sep16_scaffold_7654
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3166 bp 47.13 17.58 81.87
PLM4_90_b2_sep16_scaffold_8262 3 3042 bp 48.55 9.96 70.41
PLM4_90_b2_sep16_scaffold_12419
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 3705 bp 52.09 5.95 82.83
PLM4_90_b2_sep16_scaffold_3133
Class: Deltaproteobacteria (66.67%)
3 4831 bp 49.97 14.69 94.14
PLM4_90_b2_sep16_scaffold_7938
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 3104 bp 47.13 8.89 93.85
PLM4_90_b2_sep16_scaffold_8291
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 3036 bp 47.20 14.38 96.05
PLM4_90_b2_sep16_scaffold_10669
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3417 bp 50.48 14.35 88.85
PLM4_90_b2_sep16_scaffold_1736
Species: RBG_16_Deltaproteobacteria_49_23_curated (66.67%)
3 6326 bp 46.08 10.08 95.70
PLM4_90_b2_sep16_scaffold_5906
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3595 bp 45.56 17.48 74.27
PLM4_90_b2_sep16_scaffold_7958
Class: Deltaproteobacteria (66.67%)
3 3101 bp 49.79 12.92 77.68
PLM4_90_b2_sep16_scaffold_8056
Domain: Bacteria (66.67%)
3 3081 bp 51.61 11.34 85.98
PLM4_90_b2_sep16_scaffold_2267
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 5609 bp 49.24 16.87 95.95
PLM4_90_b2_sep16_scaffold_18004
Class: Deltaproteobacteria (66.67%)
3 3236 bp 49.01 9.64 62.39
PLM4_90_b2_sep16_scaffold_7200
Species: RBG_13_Deltaproteobacteria_52_11b_curated (66.67%)
3 3264 bp 53.43 8.87 92.83
PLM4_90_b2_sep16_scaffold_6049
Domain: Bacteria (100%)
3 4031 bp 50.63 14.29 93.40
PLM4_90_b2_sep16_scaffold_7739
Class: Deltaproteobacteria (100%)
3 3145 bp 48.78 10.92 90.62
PLM4_90_b2_sep16_scaffold_6327
Class: Deltaproteobacteria (66.67%)
3 4587 bp 48.72 13.37 82.80
PLM4_90_b2_sep16_scaffold_15512
Species: RBG_13_Deltaproteobacteria_53_10_curated (66.67%)
3 3633 bp 44.98 14.78 86.13
PLM4_90_b2_sep16_scaffold_8096
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3072 bp 49.02 11.33 93.36
PLM4_90_b2_sep16_scaffold_4571
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 4070 bp 51.01 10.10 92.87
PLM4_90_b2_sep16_scaffold_12759
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
3 3462 bp 50.20 8.15 81.02
PLM4_90_b2_sep16_scaffold_7752
Domain: Bacteria (66.67%)
3 3143 bp 51.45 14.84 75.98
PLM4_90_b2_sep16_scaffold_4321
Class: Deltaproteobacteria (100%)
3 4179 bp 51.26 15.65 97.06
PLM4_90_b2_sep16_scaffold_3474
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 4609 bp 49.38 11.98 80.19
PLM4_90_b2_sep16_scaffold_4843
Domain: Bacteria (100%)
3 3960 bp 46.26 23.07 95.00
PLM4_90_b2_sep16_scaffold_19213
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 3355 bp 49.54 13.19 83.96
PLM4_90_b2_sep16_scaffold_5462
Class: Deltaproteobacteria (66.67%)
3 3743 bp 48.57 17.23 93.37
PLM4_90_b2_sep16_scaffold_7515
Class: Deltaproteobacteria (66.67%)
3 3194 bp 46.49 7.09 67.72
PLM4_90_b2_sep16_scaffold_3999
Species: RBG_16_Chloroflexi_50_9_curated (66.67%)
3 4343 bp 51.74 12.99 88.56
PLM4_90_b2_sep16_scaffold_7017
Species: RBG_16_Deltaproteobacteria_54_18_curated (66.67%)
3 3311 bp 51.56 18.08 90.61
PLM4_90_b2_sep16_scaffold_7023
Species: R_Acidobacteria_61_28 (66.67%)
3 3309 bp 49.56 13.10 69.36
PLM4_90_b2_sep16_scaffold_8918
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 3385 bp 48.21 14.22 96.34
PLM4_90_b2_sep16_scaffold_7293
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3243 bp 47.36 13.37 66.42
PLM4_90_b2_sep16_scaffold_1857
Class: Deltaproteobacteria (66.67%)
3 6161 bp 48.63 10.57 85.99
PLM4_90_b2_sep16_scaffold_8163
Domain: Bacteria (66.67%)
3 3060 bp 50.75 10.29 100.69
PLM4_90_b2_sep16_scaffold_15071
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
3 3197 bp 47.08 15.39 79.39
PLM4_90_b2_sep16_scaffold_12319
Class: Deltaproteobacteria (66.67%)
3 3269 bp 48.85 11.65 74.79
PLM4_90_b2_sep16_scaffold_6410
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
3 3457 bp 47.58 10.98 88.78
PLM4_90_b2_sep16_scaffold_5788
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
2 3631 bp 47.29 16.85 90.22
PLM4_90_b2_sep16_scaffold_7839
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
2 3124 bp 48.78 12.58 77.59
PLM4_90_b2_sep16_scaffold_5136
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
2 3857 bp 49.94 9.45 82.37
PLM4_90_b2_sep16_scaffold_8068
Species: RBG_16_Chloroflexi_50_9_curated (50%)
2 3078 bp 51.30 14.47 91.81
PLM4_90_b2_sep16_scaffold_6814
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
2 3629 bp 47.73 12.65 84.16
PLM4_90_b2_sep16_scaffold_8333
Species: GWB1_Spirochaetes_59_5_curated (50%)
2 3030 bp 50.33 6.19 97.33
PLM4_90_b2_sep16_scaffold_21147
Species: RifOxyA12_full_Lentisphaerae_48_11_curated (50%)
2 3296 bp 43.29 5.28 83.01
Displaying items 501-550 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.