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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 451-500 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_12495
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 3403 bp 50.31 9.43 95.30
PLM4_90_b2_sep16_scaffold_5443
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
4 3750 bp 44.83 15.56 88.80
PLM4_90_b2_sep16_scaffold_7235
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3255 bp 48.88 12.81 90.51
PLM4_90_b2_sep16_scaffold_6587
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3409 bp 46.85 14.04 88.18
PLM4_90_b2_sep16_scaffold_17171
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3690 bp 45.56 16.06 87.80
PLM4_90_b2_sep16_scaffold_6588
Class: Deltaproteobacteria (75%)
4 3408 bp 47.04 12.19 94.54
PLM4_90_b2_sep16_scaffold_3461
Species: Roseiflexus castenholzii (50%)
4 4619 bp 48.58 11.43 94.44
PLM4_90_b2_sep16_scaffold_7750
Class: Deltaproteobacteria (75%)
4 3143 bp 46.96 8.35 94.88
PLM4_90_b2_sep16_scaffold_8118
Class: Deltaproteobacteria (50%)
4 3068 bp 44.75 7.14 84.09
PLM4_90_b2_sep16_scaffold_8376
Class: Deltaproteobacteria (75%)
4 3734 bp 48.66 12.37 91.35
PLM4_90_b2_sep16_scaffold_11640
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3173 bp 47.59 11.20 84.62
PLM4_90_b2_sep16_scaffold_25761
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3424 bp 44.54 5.70 89.28
PLM4_90_b2_sep16_scaffold_4596
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 4061 bp 49.52 13.59 99.14
PLM4_90_b2_sep16_scaffold_4597
Class: Deltaproteobacteria (50%)
4 4061 bp 42.23 20.94 88.94
PLM4_90_b2_sep16_scaffold_17456
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 4429 bp 47.37 8.37 74.98
PLM4_90_b2_sep16_scaffold_22121
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3124 bp 46.61 12.48 89.60
PLM4_90_b2_sep16_scaffold_6619
Class: Deltaproteobacteria (50%)
4 3397 bp 47.10 14.17 51.84
PLM4_90_b2_sep16_scaffold_4604
Class: Deltaproteobacteria (50%)
4 4058 bp 47.59 10.35 82.06
PLM4_90_b2_sep16_scaffold_5477
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3740 bp 49.30 18.73 83.58
PLM4_90_b2_sep16_scaffold_5224
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3824 bp 48.14 13.34 82.69
PLM4_90_b2_sep16_scaffold_6368
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 3819 bp 46.98 9.27 62.53
PLM4_90_b2_sep16_scaffold_8392
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3019 bp 46.51 16.20 93.01
PLM4_90_b2_sep16_scaffold_18597
Species: Desulfovibrio sp. TomC (50%)
4 3108 bp 45.95 5.21 72.01
PLM4_90_b2_sep16_scaffold_4101
Class: Deltaproteobacteria (100%)
4 4292 bp 47.23 14.78 81.43
PLM4_90_b2_sep16_scaffold_7284
Class: Deltaproteobacteria (100%)
4 3244 bp 48.74 15.95 98.21
PLM4_90_b2_sep16_scaffold_13301
Species: RLO_Entotheonella_69_37 (50%)
4 3512 bp 49.29 13.07 88.33
PLM4_90_b2_sep16_scaffold_6637
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3392 bp 47.58 13.66 89.95
PLM4_90_b2_sep16_scaffold_11160
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 3957 bp 49.05 11.18 81.50
PLM4_90_b2_sep16_scaffold_5242
Species: RBG_13_Deltaproteobacteria_43_22_curated (75%)
4 3816 bp 51.44 16.12 84.98
PLM4_90_b2_sep16_scaffold_4882
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 5049 bp 47.99 14.50 85.26
PLM4_90_b2_sep16_scaffold_4633
Order: Syntrophobacterales (50%)
4 4045 bp 50.01 8.83 96.79
PLM4_90_b2_sep16_scaffold_4894
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3942 bp 48.27 16.29 79.00
PLM4_90_b2_sep16_scaffold_8423
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3013 bp 49.75 16.43 86.92
PLM4_90_b2_sep16_scaffold_7818
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3128 bp 52.11 7.24 87.56
PLM4_90_b2_sep16_scaffold_8431
Species: CSP1_2_Dadabacteria (50%)
4 3689 bp 47.55 13.82 80.18
PLM4_90_b2_sep16_scaffold_4396
Class: Deltaproteobacteria (75%)
4 4145 bp 51.24 11.94 84.75
PLM4_90_b2_sep16_scaffold_8439
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3011 bp 46.33 13.05 56.89
PLM4_90_b2_sep16_scaffold_8185
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3902 bp 46.13 16.57 85.26
PLM4_90_b2_sep16_scaffold_3034
Domain: Bacteria (66.67%)
3 4905 bp 44.28 11.47 89.54
PLM4_90_b2_sep16_scaffold_6932
Class: Deltaproteobacteria (100%)
3 3329 bp 48.96 11.85 87.77
PLM4_90_b2_sep16_scaffold_21493
Species: RBG_16_Deltaproteobacteria_50_11_curated (100%)
3 3187 bp 51.15 11.86 92.91
PLM4_90_b2_sep16_scaffold_14439
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 3040 bp 46.05 15.35 79.84
PLM4_90_b2_sep16_scaffold_8456
Species: RBG_16_Deltaproteobacteria_50_11_curated (100%)
3 3009 bp 45.63 18.64 91.03
PLM4_90_b2_sep16_scaffold_6433
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3452 bp 49.45 18.99 91.34
PLM4_90_b2_sep16_scaffold_3822
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 4429 bp 46.38 12.36 87.58
PLM4_90_b2_sep16_scaffold_15122
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
3 3967 bp 50.14 12.89 83.26
PLM4_90_b2_sep16_scaffold_7099
Species: RBG_16_Deltaproteobacteria_49_23_curated (66.67%)
3 3290 bp 45.87 13.59 75.87
PLM4_90_b2_sep16_scaffold_6714
Species: RBG_16_Chloroflexi_57_8_curated (66.67%)
3 3376 bp 49.20 12.35 73.76
PLM4_90_b2_sep16_scaffold_13123
Species: RBG_13_Deltaproteobacteria_52_11b_curated (100%)
3 3662 bp 49.21 12.62 83.56
PLM4_90_b2_sep16_scaffold_3602
Class: Deltaproteobacteria (100%)
3 4535 bp 50.36 11.44 52.33
Displaying items 451-500 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.