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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 401-450 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_7209
Species: BJP_IG2069_Desfulfarculales_53_13 (75%)
4 5976 bp 51.59 15.06 89.91
PLM4_90_b2_sep16_scaffold_4145
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (71.43%)
7 5380 bp 41.95 19.18 89.94
PLM4_90_b2_sep16_scaffold_6637
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3392 bp 47.58 13.66 89.95
PLM4_90_b2_sep16_scaffold_2384
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
12 9781 bp 48.35 12.87 89.96
PLM4_90_b2_sep16_scaffold_2330
Class: Deltaproteobacteria (100%)
5 5552 bp 51.28 12.51 90.02
PLM4_90_b2_sep16_scaffold_2476
Class: Deltaproteobacteria (80%)
10 12950 bp 45.20 7.60 90.02
PLM4_90_b2_sep16_scaffold_1648
Species: RBG_16_Deltaproteobacteria_48_10_curated (62.5%)
8 6462 bp 46.55 14.67 90.11
PLM4_90_b2_sep16_scaffold_5788
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
2 3631 bp 47.29 16.85 90.22
PLM4_90_b2_sep16_scaffold_5450
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 3747 bp 47.08 15.65 90.23
PLM4_90_b2_sep16_scaffold_612
Species: RBG_16_Deltaproteobacteria_47_11_curated (64.29%)
14 10471 bp 49.13 17.00 90.25
PLM4_90_b2_sep16_scaffold_23572
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3087 bp 49.08 15.21 90.28
PLM4_90_b2_sep16_scaffold_604
Species: RBG_16_Deltaproteobacteria_49_23_curated (80%)
10 10162 bp 50.70 15.51 90.31
PLM4_90_b2_sep16_scaffold_1959
Species: RBG_19FT_COMBO_Chloroflexi_48_23_curated (50%)
6 6003 bp 47.98 11.12 90.35
PLM4_90_b2_sep16_scaffold_2182
Species: CG_Delta_05 (50%)
6 5701 bp 51.01 12.26 90.46
PLM4_90_b2_sep16_scaffold_7235
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3255 bp 48.88 12.81 90.51
PLM4_90_b2_sep16_scaffold_3058
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
8 8241 bp 47.34 19.44 90.57
PLM4_90_b2_sep16_scaffold_10172
Domain: Bacteria (83.33%)
6 3587 bp 49.26 6.02 90.58
PLM4_90_b2_sep16_scaffold_1049
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
10 12531 bp 44.73 14.57 90.59
PLM4_90_b2_sep16_scaffold_3313
Class: Deltaproteobacteria (100%)
8 8752 bp 48.01 15.31 90.60
PLM4_90_b2_sep16_scaffold_7017
Species: RBG_16_Deltaproteobacteria_54_18_curated (66.67%)
3 3311 bp 51.56 18.08 90.61
PLM4_90_b2_sep16_scaffold_7739
Class: Deltaproteobacteria (100%)
3 3145 bp 48.78 10.92 90.62
PLM4_90_b2_sep16_scaffold_15115
Species: RBG_13_Deltaproteobacteria_47_9_curated (66.67%)
6 4939 bp 43.92 8.90 90.63
PLM4_90_b2_sep16_scaffold_3224
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (57.14%)
7 4773 bp 47.33 13.54 90.63
PLM4_90_b2_sep16_scaffold_2966
Class: Deltaproteobacteria (93.75%)
16 16544 bp 48.97 14.67 90.74
PLM4_90_b2_sep16_scaffold_3287
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 4734 bp 48.23 15.02 90.75
PLM4_90_b2_sep16_scaffold_970
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
8 8109 bp 48.29 16.20 90.75
PLM4_90_b2_sep16_scaffold_1074
Species: RBG_16_Deltaproteobacteria_47_11_curated (90.91%)
11 8257 bp 47.28 15.01 90.76
PLM4_90_b2_sep16_scaffold_804
Class: Deltaproteobacteria (55.56%)
9 10224 bp 50.65 12.41 90.87
PLM4_90_b2_sep16_scaffold_8143
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 5828 bp 49.28 13.25 90.91
PLM4_90_b2_sep16_scaffold_5852
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 3613 bp 44.34 9.05 90.92
PLM4_90_b2_sep16_scaffold_4696
Class: Deltaproteobacteria (100%)
6 4023 bp 48.42 13.57 90.98
PLM4_90_b2_sep16_scaffold_6761
Domain: Bacteria (71.43%)
7 4969 bp 47.11 13.31 90.98
PLM4_90_b2_sep16_scaffold_7915
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3524 bp 50.60 13.41 91.00
PLM4_90_b2_sep16_scaffold_7153
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 4021 bp 48.17 11.97 91.02
PLM4_90_b2_sep16_scaffold_8456
Species: RBG_16_Deltaproteobacteria_50_11_curated (100%)
3 3009 bp 45.63 18.64 91.03
PLM4_90_b2_sep16_scaffold_13617
Domain: Bacteria (100%)
8 6726 bp 49.76 5.55 91.08
PLM4_90_b2_sep16_scaffold_4043
Species: BJP_IG2069_Desfulfarculales_53_13 (75%)
4 4324 bp 52.91 9.85 91.17
PLM4_90_b2_sep16_scaffold_2227
Class: Deltaproteobacteria (100%)
10 11152 bp 49.98 18.00 91.28
PLM4_90_b2_sep16_scaffold_943
Domain: Bacteria (92.86%)
14 9855 bp 51.16 13.50 91.29
PLM4_90_b2_sep16_scaffold_11630
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
8 6467 bp 48.55 9.35 91.29
PLM4_90_b2_sep16_scaffold_2213
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (85.71%)
7 5665 bp 46.53 9.43 91.30
PLM4_90_b2_sep16_scaffold_4608
Class: Deltaproteobacteria (80%)
5 4537 bp 47.98 14.51 91.32
PLM4_90_b2_sep16_scaffold_13990
Species: Desulfococcus oleovorans (50%)
4 3236 bp 51.64 8.71 91.32
PLM4_90_b2_sep16_scaffold_6433
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3452 bp 49.45 18.99 91.34
PLM4_90_b2_sep16_scaffold_8376
Class: Deltaproteobacteria (75%)
4 3734 bp 48.66 12.37 91.35
PLM4_90_b2_sep16_scaffold_6398
Class: Deltaproteobacteria (100%)
5 4282 bp 49.11 12.65 91.36
PLM4_90_b2_sep16_scaffold_5310
Class: Deltaproteobacteria (80%)
5 3792 bp 49.89 14.00 91.38
PLM4_90_b2_sep16_scaffold_1691
Class: Deltaproteobacteria (77.78%)
9 7927 bp 48.19 8.74 91.40
PLM4_90_b2_sep16_scaffold_3078
Class: Deltaproteobacteria (100%)
4 4874 bp 47.99 17.60 91.40
PLM4_90_b2_sep16_scaffold_8205
Species: GWC2_Syntrophus_56_31_curated (66.67%)
6 4572 bp 53.19 10.24 91.47
Displaying items 401-450 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.