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PLM4_90_b2_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b2_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b2_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 451-500 of 558 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b2_sep16_scaffold_29810
Phylum: Proteobacteria (50%)
6 3632 bp 50.14 6.28 91.52
PLM4_90_b2_sep16_scaffold_1457
Species: RBG_16_Deltaproteobacteria_47_11_curated (88.89%)
9 8245 bp 48.73 17.76 91.55
PLM4_90_b2_sep16_scaffold_1907
Class: Deltaproteobacteria (85.71%)
7 6082 bp 48.09 18.82 91.60
PLM4_90_b2_sep16_scaffold_2466
Class: Deltaproteobacteria (100%)
7 5403 bp 47.60 11.33 91.67
PLM4_90_b2_sep16_scaffold_13428
Species: RBG_13_Deltaproteobacteria_53_10_curated (75%)
4 3074 bp 52.15 13.42 91.74
PLM4_90_b2_sep16_scaffold_10639
Species: R_Deltaproteobacteria_42_39 (50%)
4 3873 bp 48.54 13.94 91.79
PLM4_90_b2_sep16_scaffold_1678
Species: RBG_16_Deltaproteobacteria_47_11_curated (63.64%)
11 8208 bp 48.65 12.81 91.81
PLM4_90_b2_sep16_scaffold_8068
Species: RBG_16_Chloroflexi_50_9_curated (50%)
2 3078 bp 51.30 14.47 91.81
PLM4_90_b2_sep16_scaffold_2748
Class: Deltaproteobacteria (93.75%)
16 10990 bp 48.64 8.63 91.83
PLM4_90_b2_sep16_scaffold_10417
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 3400 bp 48.62 8.60 91.85
PLM4_90_b2_sep16_scaffold_7707
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3152 bp 44.67 12.37 91.94
PLM4_90_b2_sep16_scaffold_4656
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
10 8637 bp 48.93 13.98 91.98
PLM4_90_b2_sep16_scaffold_1505
Class: Deltaproteobacteria (85.71%)
7 6693 bp 50.05 14.37 92.07
PLM4_90_b2_sep16_scaffold_1551
Class: Deltaproteobacteria (57.14%)
7 6607 bp 51.04 10.35 92.08
PLM4_90_b2_sep16_scaffold_679
Class: Deltaproteobacteria (83.33%)
12 11676 bp 49.73 19.00 92.14
PLM4_90_b2_sep16_scaffold_1520
Species: RBG_16_Deltaproteobacteria_47_11_curated (63.64%)
11 11057 bp 49.29 15.22 92.17
PLM4_90_b2_sep16_scaffold_404
Class: Deltaproteobacteria (94.12%)
17 12092 bp 47.35 17.37 92.19
PLM4_90_b2_sep16_scaffold_6394
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
2 3462 bp 48.58 12.52 92.20
PLM4_90_b2_sep16_scaffold_1888
Class: Deltaproteobacteria (85.71%)
7 6110 bp 48.64 19.54 92.26
PLM4_90_b2_sep16_scaffold_1166
Species: RBG_16_Deltaproteobacteria_47_11_curated (64.29%)
14 11305 bp 47.97 16.49 92.48
PLM4_90_b2_sep16_scaffold_3575
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 6879 bp 49.73 16.40 92.50
PLM4_90_b2_sep16_scaffold_1207
Class: Deltaproteobacteria (87.5%)
8 7364 bp 51.39 12.73 92.60
PLM4_90_b2_sep16_scaffold_8287
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 4571 bp 48.94 18.67 92.67
PLM4_90_b2_sep16_scaffold_3015
Species: RBG_16_Deltaproteobacteria_49_23_curated (87.5%)
8 6931 bp 51.00 11.75 92.71
PLM4_90_b2_sep16_scaffold_14803
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
5 3306 bp 47.04 13.70 92.74
PLM4_90_b2_sep16_scaffold_7616
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3173 bp 48.41 17.16 92.75
PLM4_90_b2_sep16_scaffold_7200
Species: RBG_13_Deltaproteobacteria_52_11b_curated (66.67%)
3 3264 bp 53.43 8.87 92.83
PLM4_90_b2_sep16_scaffold_2312
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 5564 bp 49.01 18.25 92.85
PLM4_90_b2_sep16_scaffold_4571
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 4070 bp 51.01 10.10 92.87
PLM4_90_b2_sep16_scaffold_21493
Species: RBG_16_Deltaproteobacteria_50_11_curated (100%)
3 3187 bp 51.15 11.86 92.91
PLM4_90_b2_sep16_scaffold_2193
Species: BJP_IG2069_Desfulfarculales_53_13 (57.14%)
7 5683 bp 51.72 9.66 92.96
PLM4_90_b2_sep16_scaffold_3652
Domain: Bacteria (80%)
5 4507 bp 48.81 13.38 92.99
PLM4_90_b2_sep16_scaffold_8392
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3019 bp 46.51 16.20 93.01
PLM4_90_b2_sep16_scaffold_13363
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 3557 bp 48.44 16.32 93.11
PLM4_90_b2_sep16_scaffold_28232
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3342 bp 49.70 8.53 93.18
PLM4_90_b2_sep16_scaffold_20181
Domain: Bacteria (50%)
6 3135 bp 47.27 8.04 93.21
PLM4_90_b2_sep16_scaffold_4539
Species: RBG_16_Deltaproteobacteria_47_11_curated (62.5%)
8 8442 bp 50.12 13.63 93.28
PLM4_90_b2_sep16_scaffold_8096
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3072 bp 49.02 11.33 93.36
PLM4_90_b2_sep16_scaffold_1413
Class: Deltaproteobacteria (50%)
8 6876 bp 47.47 7.11 93.37
PLM4_90_b2_sep16_scaffold_5462
Class: Deltaproteobacteria (66.67%)
3 3743 bp 48.57 17.23 93.37
PLM4_90_b2_sep16_scaffold_4985
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (75%)
4 3910 bp 49.34 16.30 93.38
PLM4_90_b2_sep16_scaffold_6049
Domain: Bacteria (100%)
3 4031 bp 50.63 14.29 93.40
PLM4_90_b2_sep16_scaffold_5360
Species: RBG_16_Deltaproteobacteria_48_10_curated (57.14%)
7 6353 bp 50.09 12.89 93.50
PLM4_90_b2_sep16_scaffold_2661
Species: RBG_16_Deltaproteobacteria_49_23_curated (55.56%)
9 8318 bp 51.02 11.29 93.52
PLM4_90_b2_sep16_scaffold_5613
Species: BJP_IG2069_Desfulfarculales_53_13 (60%)
5 3691 bp 51.34 10.97 93.71
PLM4_90_b2_sep16_scaffold_6478
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 4062 bp 49.21 12.11 93.72
PLM4_90_b2_sep16_scaffold_4284
Species: RBG_16_Deltaproteobacteria_47_11_curated (71.43%)
7 6713 bp 47.19 21.85 93.80
PLM4_90_b2_sep16_scaffold_1770
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
13 7974 bp 49.40 14.60 93.83
PLM4_90_b2_sep16_scaffold_7938
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 3104 bp 47.13 8.89 93.85
PLM4_90_b2_sep16_scaffold_282
Class: Deltaproteobacteria (100%)
16 15366 bp 42.24 19.72 93.85
Displaying items 451-500 of 558 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.