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PLM4_90_b2_sep16_scaffold_792

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b2_sep16_scaffold_792_1
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(29..784)
DNA (756bp) protein (252aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NFD3_DESAR
HAD-superfamily hydrolase
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_792_2
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(765..1367)
DNA (603bp) protein (201aa)
Uroporphyrinogen-III C-methyltransferase bin=GWC2_Deltaproteobacteria_56_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
uroporphyrin-III C-methyltransferase
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_792_3
unknown

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1651..1908
DNA (258bp) protein (86aa)

This feature has no annotations

PLM4_90_b2_sep16_scaffold_792_4
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1846..2787)
DNA (942bp) protein (314aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_792_5
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2777..4114)
DNA (1338bp) protein (446aa)
glutamyl-tRNA reductase
Glutamyl-tRNA reductase bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_48_10_curated
PLM4_90_b2_sep16_scaffold_792_6
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4153..4791)
DNA (639bp) protein (213aa)
ResC/HemX-like cytochrome c biogenesis membrane protein bin=GWC2_Proteo_65_14_Ab886 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
cytochrome c assembly protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_792_7
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4803..6149)
DNA (1347bp) protein (449aa)
Uncharacterized protein bin=GWC2_Deltaproteobacteria_55_46 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
radical SAM protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b2_sep16_scaffold_792_8
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6302..7339
DNA (1038bp) protein (346aa)
Cell shape-determining protein MreB bin=GWC2_Pelobacter_58_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
mreB; rod shape-determining protein MreB
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_792_9
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7345..8229
DNA (885bp) protein (295aa)
Cell shape-determining protein MreC Tax=uncultured Desulfobacterium sp. RepID=E1YLF9_9DELT
rod shape-determining protein MreC
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_792_10
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8226..8750
DNA (525bp) protein (175aa)
Rod shape-determining protein MreD Tax=Lachnospiraceae RepID=E9RU24_9FIRM
rod shape-determining protein MreD
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b2_sep16_scaffold_792_11
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8754..10628
DNA (1875bp) protein (625aa)
penicillin-binding protein 2 (EC:2.4.1.129)
Penicillin-binding protein 2 bin=GWC2_Deltaproteobacteria_42_51 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_792_12
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10615..11718
DNA (1104bp) protein (368aa)
Rod shape-determining protein bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
rod shape-determining protein
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_90_b2_sep16_scaffold_792_13
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11942..12349)
DNA (408bp) protein (136aa)
Single-stranded DNA-binding protein bin=GWB2_Proteobacteria_55_19 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
single-strand binding protein
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_90_b2_sep16_scaffold_792_14
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12643..13215
DNA (573bp) protein (191aa)
Apocytochrome c disulfide reductase lipoprotein ResA Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EBB3_GEOBB
trx-1; TlpA family-like protein disulfide reductase lipoprotein
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b2_sep16_scaffold_792_15
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13257..14798
DNA (1542bp) protein (514aa)
Lon protease Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74EN9_GEOSL
peptidase
Tax=RBG_16_Deltaproteobacteria_48_10_curated
Displaying 15 items

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