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PLM4_90_coex_sep16_scaffold_26

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_26_1
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42..1715)
DNA (1674bp) protein (558aa)
Membrane protein insertase YidC bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_26_2
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1973..2359)
DNA (387bp) protein (129aa)
ribonuclease P (EC:3.1.26.5)
Ribonuclease P protein component Tax=uncultured Acidobacteria bacterium RepID=H5SCK3_9BACT
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_26_3
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2806..4569
DNA (1764bp) protein (588aa)
sfu:Sfum_2687 formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3] bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
formate--tetrahydrofolate ligase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4687..5418)
DNA (732bp) protein (244aa)
thyX; FAD-dependent thymidylate synthase (EC:2.1.1.148)
Thymidylate synthase ThyX Tax=Desulfovibrio vulgaris RepID=THYX_DESVH
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_5
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5571..6788
DNA (1218bp) protein (406aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHL0_9FIRM
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_6
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6842..7762)
DNA (921bp) protein (307aa)
Porphobilinogen deaminase bin=GWC2_Nitrospirae_57_13 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hemC; porphobilinogen deaminase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_7
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8069..9403
DNA (1335bp) protein (445aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9FYL1_SORC5
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_26_8
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9569..9994
DNA (426bp) protein (142aa)
hypothetical protein Tax=Cloacimonetes bacterium SCGC AAA252-N05 RepID=UPI000374CD2F
sulfurtransferase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_26_9
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10043..10951
DNA (909bp) protein (303aa)
hypothetical protein Tax=Aminicenantes RepID=UPI000371894E
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10948..11493
DNA (546bp) protein (182aa)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_11
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11477..12541
DNA (1065bp) protein (355aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_12
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12547..13149)
DNA (603bp) protein (201aa)
Conserved domain protein Tax=delta proteobacterium NaphS2 RepID=D8FF61_9DELT
gluconate kinase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_13
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13146..14054)
DNA (909bp) protein (303aa)
PHP domain protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
metal-dependent phosphoesterase, PHP family
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_14
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14112..15134)
DNA (1023bp) protein (341aa)
Aminoglycoside phosphotransferase Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ADD7_THEID
aminoglycoside phosphotransferase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_15
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15320..16459)
DNA (1140bp) protein (380aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M4U1_GEODF
deoxyguanosinetriphosphate triphosphohydrolase-like protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_16
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16645..19089
DNA (2445bp) protein (815aa)
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_17
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19268..20653
DNA (1386bp) protein (462aa)
Chromosomal replication initiator protein DnaA bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
dnaA; chromosomal replication initiation protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_18
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20789..21895
DNA (1107bp) protein (369aa)
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDX2_GEOUR
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_19
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21975..24383
DNA (2409bp) protein (803aa)
DNA gyrase subunit B bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
DNA gyrase subunit B
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_20
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24383..24979
DNA (597bp) protein (199aa)
coaE; dephospho-CoA kinase
Dephospho-CoA kinase bin=GWC2_Nitrospirae-rel_56_14 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_21
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24976..26238
DNA (1263bp) protein (421aa)
Transcription termination factor Rho bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
transcription termination factor Rho
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_22
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26317..26541
DNA (225bp) protein (75aa)
50S ribosomal protein L31 bin=GWF2_TM6_28_16 species=GWF2_TM6_27_16 genus=GWF2_TM6_27_16 taxon_order=GWF2_TM6_27_16 taxon_class=GWF2_TM6_27_16 phylum=TM6 tax=GWF2_TM6_28_16 organism_group=TM6
50S ribosomal protein L31
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_23
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26737..27828
DNA (1092bp) protein (364aa)
Peptide chain release factor 1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=RF1_DESAA
peptide chain release factor 1
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_24
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27828..28691
DNA (864bp) protein (288aa)
Release factor glutamine methyltransferase Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A130_PELCD
hemK; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_26_25
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28711..29751
DNA (1041bp) protein (347aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=MURA_PELCD
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 25 items

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