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PLM4_90_coex_sep16_scaffold_341

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_341_1
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..261)
DNA (261bp) protein (87aa)
Foldase protein bin=GWC2_Proteo_65_14_Ab886 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_2

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comp(433..1182)
DNA (750bp) protein (250aa)
Marine sediment metagenome DNA, contig: S06H3_C01017 {ECO:0000313|EMBL:GAH91101.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ttr:Tter_1452 molybdenum cofactor synthesis domain protein; K03750 molybdopterin biosynthesis protein MoeA bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
molybdenum cofactor synthesis domain-containing protein
PLM4_90_coex_sep16_scaffold_341_3

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comp(1179..1649)
DNA (471bp) protein (157aa)
Marine sediment metagenome DNA, contig: S01H4_C04498 {ECO:0000313|EMBL:GAG71525.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ttr:Tter_1452 molybdenum cofactor synthesis domain protein; K03750 molybdopterin biosynthesis protein MoeA bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
molybdenum cofactor synthesis domain-containing protein
PLM4_90_coex_sep16_scaffold_341_4
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1717..5037)
DNA (3321bp) protein (1107aa)
Transcription-repair coupling factor bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription-repair coupling factor
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_5
unknown

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comp(5072..5269)
DNA (198bp) protein (66aa)

This feature has no annotations

PLM4_90_coex_sep16_scaffold_341_6
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5345..6100
DNA (756bp) protein (252aa)
Putative DNA-binding protein Tax=Thioflavicoccus mobilis 8321 RepID=L0GUJ6_9GAMM
DNA-binding protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_7
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6122..6481
DNA (360bp) protein (120aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036D2760
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_8
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6486..6761
DNA (276bp) protein (92aa)
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_9
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6797..7660
DNA (864bp) protein (288aa)
NTPase, 4Fe-4S-binding protein bin=GWF2_Geobacter_54_21 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
cobyrinic acid ac-diamide synthase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_10
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7667..8551
DNA (885bp) protein (295aa)
Cobyrinic acid ac-diamide synthase bin=GWF2_Geobacter_54_21 species=Desulfovibrio salexigens genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
cobyrinic acid a,c-diamide synthase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_11
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8548..9774
DNA (1227bp) protein (409aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EYZ3_9BACT
cobyrinic acid ac-diamide synthase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_12
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9828..10064
DNA (237bp) protein (79aa)
id=4091546 bin=GWC2_Syntrophus__56_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
putative regulatory protein, FmdB family
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_13
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10061..10993
DNA (933bp) protein (311aa)
Beta-lactamase domain protein Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GIN0_METPE
beta-lactamase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_341_14
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11033..11425
DNA (393bp) protein (131aa)
Nitrogen-fixing NifU domain protein Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQD6_PELPD
NifU domain-containing protein
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_341_15
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11470..11757)
DNA (288bp) protein (96aa)
Phosphoribosyltransferase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDC6_AMMDK
phosphoribosyltransferase
Tax=RBG_16_Gamma2_65_34_curated
PLM4_90_coex_sep16_scaffold_341_16
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11814..12137)
DNA (324bp) protein (108aa)
Phosphoribosyltransferase Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D4X9_METSW
phosphoribosyltransferase
Tax=RBG_16_Gamma2_65_34_curated
PLM4_90_coex_sep16_scaffold_341_17
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

12201..13682
DNA (1482bp) protein (494aa)
DEAD/DEAH box helicase family protein bin=GWC2_Chloroflexi_49_37 species=Desulfovibrio sp. A2 genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
superfamily II DNA/RNA helicase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM4_90_coex_sep16_scaffold_341_18
unknown

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comp(13834..14619)
DNA (786bp) protein (262aa)

This feature has no annotations

PLM4_90_coex_sep16_scaffold_341_19
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14676..14873)
DNA (198bp) protein (66aa)
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM4_90_coex_sep16_scaffold_341_20
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14884..15201)
DNA (318bp) protein (106aa)
id=1921501 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
Displaying 20 items

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