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PLM4_90_coex_sep16_scaffold_446

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_coex_sep16_scaffold_446_1
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..353
DNA (351bp) protein (117aa)
Cytidylyltransferase family protein
Dolichol kinase bin=GWF2_Ignavibacteria_33_9 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_33_9 organism_group=Ignavibacteria
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_2
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1108..1272)
DNA (165bp) protein (55aa)
Molybdenum cofactor biosynthesis protein MoaC Tax=Thermobrachium celere DSM 8682 RepID=R7RQS2_9CLOT
molybdenum cofactor biosynthesis protein C
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_3
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1242..1496)
DNA (255bp) protein (85aa)
Molybdenum cofactor biosynthesis protein C bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
moaC2; molybdenum cofactor biosynthesis protein C
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_4
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1500..2531)
DNA (1032bp) protein (344aa)
molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein bin=GWC2_NOV_55_46 species=Desulfurispora thermophila genus=Desulfurispora taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_NOV_55_46 organism_group=Proteobacteria
molybdenum cofactor biosynthesis protein A
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_trna_2
unknown

Not on your lists

comp(2582..2666)
DNA (85bp)
transferRNA Leu
PLM4_90_coex_sep16_scaffold_446_5
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

3065..3697
DNA (633bp) protein (211aa)
Putative uncharacterized protein bin=GWB2_Nitrospirae_rel_47_37 species=Thermoplasmatales archaeon SCGC AB-540-F20 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_90_coex_sep16_scaffold_446_6
unknown

Not on your lists

4277..4765
DNA (489bp) protein (163aa)

This feature has no annotations

PLM4_90_coex_sep16_scaffold_446_trna_1
unknown

Not on your lists

5298..5370
DNA (73bp)
transferRNA Ala
PLM4_90_coex_sep16_scaffold_446_7
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5461..5934)
DNA (474bp) protein (158aa)
mgsA; methylglyoxal synthase (EC:4.2.3.3); K01734 methylglyoxal synthase [EC:4.2.3.3] bin=bin5_DeltaP species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin5_DeltaP organism_group=Deltaproteobacteria
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_8
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6011..6232)
DNA (222bp) protein (74aa)
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_9
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6583..8046
DNA (1464bp) protein (488aa)
lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LVM0_SYNAS
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_10
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8046..9302
DNA (1257bp) protein (419aa)
Lipoprotein release ABC transporter, membrane protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EEW4_GEOBB
lolE-1; lipoprotein release ABC transporter permease
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_11
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9299..10495
DNA (1197bp) protein (399aa)
hypothetical protein Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00036D126D
cyclic nucleotide-binding domain-containing protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_12
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10486..11178
DNA (693bp) protein (231aa)
Lipoprotein-releasing system ATP-binding protein LolD bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
lipoprotein releasing system ATP-binding protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_13
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11198..13426
DNA (2229bp) protein (743aa)
Outer membrane protein assembly factor BamA Tax=Geobacter sp. (strain M21) RepID=C6E5C1_GEOSM
membrane protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_14
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13455..13967
DNA (513bp) protein (171aa)
membrane protein
Outer membrane protein, putative bin=GWC2_CP_Nitrospirae-rel_42_7 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_15
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13967..15034
DNA (1068bp) protein (356aa)
UDP-3-O-acylglucosamine N-acyltransferase Tax=Syntrophus aciditrophicus (strain SB) RepID=LPXD_SYNAS
UDP-3-O-[3-hydroxymyristoyl] glucosamine
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_16
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15039..15488
DNA (450bp) protein (150aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M8V9_GEODF
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_17
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15485..16261
DNA (777bp) protein (259aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase bin=GWC2_Deltaproteobacteria_42_51 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_18
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16264..17199
DNA (936bp) protein (312aa)
UDP-N-acetylglucosamine 3-dehydrogenase, NAD-dependent bin=GWC2_Deltaproteobacteria_42_51 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
gnnA; UDP-N-acetylglucosamine 3-dehydrogenase, NAD-dependent
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_19
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17199..18344
DNA (1146bp) protein (382aa)
Lipid-A-disaccharide synthase Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=LPXB_GEOMG
lpxB; lipid-A-disaccharide synthase
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_20
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18341..20164
DNA (1824bp) protein (608aa)
Lipid A export ATP-binding/permease protein MsbA Tax=Syntrophus aciditrophicus (strain SB) RepID=MSBA_SYNAS
phospholipid-lipopolysaccharide ABC transporter
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_21
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20202..20690
DNA (489bp) protein (163aa)
Uncharacterized protein bin=GWB2_Proteobacteria_55_19 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_22
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21152..22141
DNA (990bp) protein (330aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG21_9BACT
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_23
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22095..23246
DNA (1152bp) protein (384aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase bin=GWB2_Proteobacteria_55_19 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_24
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23326..24186
DNA (861bp) protein (287aa)
Sensory transduction histidine kinases Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82TC5_NITEU
PAS/PAC sensor signal transduction histidine kinase
Tax=RBG_16_Deltaproteobacteria_54_11_curated
PLM4_90_coex_sep16_scaffold_446_25
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24191..25498
DNA (1308bp) protein (436aa)
Response regulator bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
ntrC1; NtrC family transcriptional regulator
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_coex_sep16_scaffold_446_26
unknown

Not on your lists

25624..26100
DNA (477bp) protein (159aa)

This feature has no annotations

PLM4_90_coex_sep16_scaffold_446_27
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26211..26537
DNA (327bp) protein (109aa)
Secreted protein Tax=Gillisia limnaea DSM 15749 RepID=H2BVH6_9FLAO bin=RAAC39 species=Gillisia limnaea genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_90_coex_sep16_scaffold_446_28
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26761..28605
DNA (1845bp) protein (615aa)
Response regulator receiver protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XT52_9BACT
response regulator receiver protein
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying items 1-30 of 36 in total

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