ggKbase home page

PLM4_5_b1_sep16_scaffold_12660

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_5_b1_sep16_scaffold_12660_1
unknown

Not on your lists

2..82
DNA (81bp) protein (27aa)

This feature has no annotations

PLM4_5_b1_sep16_scaffold_12660_2
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

113..1051
DNA (939bp) protein (313aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
tRNA pseudouridine synthase B Tax=Thauera sp. (strain MZ1T) RepID=C4ZJR7_THASP
truB; tRNA pseudouridine synthase B
PLM4_5_b1_sep16_scaffold_12660_3
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1114..1383
DNA (270bp) protein (90aa)
30S ribosomal protein S15 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS15_NITMU
rpsO; 30S ribosomal protein S15
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_12660_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1624..3216
DNA (1593bp) protein (531aa)
Polyribonucleotide nucleotidyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DKK3_9PROT
polynucleotide phosphorylase/polyadenylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_12660_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3159..3722
DNA (564bp) protein (188aa)
Polyribonucleotide nucleotidyltransferase Tax=Nitrosospira sp. APG3 RepID=M5DKK3_9PROT
polyribonucleotide nucleotidyltransferase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_12660_6
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3800..4222)
DNA (423bp) protein (141aa)
RNA polymerase-binding transcription factor DksA Tax=Nitrosospira sp. APG3 RepID=M5DLZ8_9PROT
dksA; TraR/DksA family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_5_b1_sep16_scaffold_12660_trna_1
unknown

Not on your lists

4417..4490
DNA (74bp)
transferRNA Pro
PLM4_5_b1_sep16_scaffold_12660_trna_2
unknown

Not on your lists

4513..4586
DNA (74bp)
transferRNA Arg
PLM4_5_b1_sep16_scaffold_12660_trna_3
unknown

Not on your lists

4619..4691
DNA (73bp)
transferRNA His
PLM4_5_b1_sep16_scaffold_12660_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4768..5499)
DNA (732bp) protein (244aa)
Putative RNA pseudouridylate synthase Tax=Bordetella bronchiseptica RepID=K4QGU3_BORBO
RNA pseudouridylate synthase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_5_b1_sep16_scaffold_12660_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5527..6825)
DNA (1299bp) protein (433aa)
hypothetical protein Tax=Burkholderia sp. JPY251 RepID=UPI000374282E
FAD dependent oxidoreductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Displaying 11 items

View Taxonomy