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PLM4_65_coex_sep16_scaffold_2

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Displaying items 1-30 of 210 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2_1
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(234..2333)
DNA (2100bp) protein (700aa)
hypothetical protein Tax=Acetivibrio cellulolyticus RepID=UPI0001E2EC2C
Uncharacterized protein {ECO:0000313|EMBL:GAM07886.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
PLM4_65_coex_sep16_scaffold_2_2

Not on your lists

comp(2980..3867)
DNA (888bp) protein (296aa)
Retron-type RNA-directed DNA polymerase (EC:2.7.7.49)
Uncharacterized protein {ECO:0000313|EMBL:KKO12026.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_65_coex_sep16_scaffold_2_3
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(4162..5163)
DNA (1002bp) protein (334aa)
Oligopeptide/dipeptide ABC transporter, ATPase subunit bin=GWC2_Nitrospirae_57_13 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
oligopeptide/dipeptide ABC transporter ATPase
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_coex_sep16_scaffold_2_4
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(5317..6417)
DNA (1101bp) protein (367aa)
Peptide/nickel transport system ATP-binding protein bin=GWC2_Nitrospirae-rel_56_14 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
alpha-galactoside ABC transporter ATP-binding protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_5
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(6414..7307)
DNA (894bp) protein (298aa)
ABC transporter, permease protein bin=GWC2_Nitrospirae-rel_56_14 species=Pseudoflavonifractor capillosus genus=Pseudoflavonifractor taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
binding-protein-dependent transporters inner membrane component
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_6
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(7438..8403)
DNA (966bp) protein (322aa)
Oligopeptide ABC transporter permease bin=GWC2_Nitrospirae-rel_56_14 species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
appB; oligopeptide ABC transporter permease
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_7
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(8486..10099)
DNA (1614bp) protein (538aa)
Peptide ABC transporter, periplasmic peptide-binding lipoprotein bin=GWC2_Nitrospirae-rel_56_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptide ABC transporter substrate-binding lipoprotein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_8
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(10191..11678)
DNA (1488bp) protein (496aa)
id=4911569 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_9
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(11735..13021)
DNA (1287bp) protein (429aa)
WD40-like Beta Propeller bin=GWC2_Nitrospirae-rel_56_14 species=Bacillus cereus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
WD40-like beta Propeller containing protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_10
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(13217..15793)
DNA (2577bp) protein (859aa)
id=4736578 bin=GWC2_Nitrospirae_57_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=GWC2_Nitrospirae_57_13_curated
PLM4_65_coex_sep16_scaffold_2_11
RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16129..16578)
DNA (450bp) protein (150aa)
id=2103040 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Tax=RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated
PLM4_65_coex_sep16_scaffold_2_12
BJP_IG2158_Nitrospirales_45_240, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(17180..19327)
DNA (2148bp) protein (716aa)
Putative uncharacterized protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LKT9_SYNFM
hypothetical protein
Tax=BJP_IG2158_Nitrospirales_45_240
PLM4_65_coex_sep16_scaffold_2_13
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19329..19838)
DNA (510bp) protein (170aa)
Lipoprotein, putative Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74EK9_GEOSL
lipoprotein
Lipoprotein, putative {ECO:0000313|EMBL:AAR34280.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_2_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19877..20356)
DNA (480bp) protein (160aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX06308.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM4_65_coex_sep16_scaffold_2_15
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20383..20931)
DNA (549bp) protein (183aa)
Lipoprotein, putative Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q74EK9_GEOSL
lipoprotein
Lipoprotein, putative {ECO:0000313|EMBL:AAR34280.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
PLM4_65_coex_sep16_scaffold_2_16
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(20946..27038)
DNA (6093bp) protein (2031aa)
Regulator of chromosome condensation RCC1 bin=GWC2_Nitrospirae-rel_56_14 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Cna B domain-containing protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_17
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

27532..29457
DNA (1926bp) protein (642aa)
ABC transporter-related protein bin=GWC2_Nitrospirae-rel_56_14 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
ABC transporter-like protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_18
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(29621..30715)
DNA (1095bp) protein (365aa)
dolichyl-phosphate beta-D-mannosyltransferase (EC:2.4.1.83)
Dolichyl-phosphate beta-D-mannosyltransferase bin=GWC2_Nitrospirae-rel_56_14 species=Nitrosospira multiformis genus=Nitrosospira taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_19
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30796..31965)
DNA (1170bp) protein (390aa)
hypothetical protein SpalD1_26673 bin=GWC2_Nitrospirae-rel_56_14 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWF2_Verrucomicrobia_62_7_curated
PLM4_65_coex_sep16_scaffold_2_20
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(32349..32873)
DNA (525bp) protein (175aa)
Tetratricopeptide TPR_2 repeat protein bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_21
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(32960..33277)
DNA (318bp) protein (106aa)
UPF0345 protein Dbac_0761 bin=GWC2_Nitrospirae-rel_56_14 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_22
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(33364..35043)
DNA (1680bp) protein (560aa)
ABC transporter related bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
putative ABC transporter ATP-binding protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_23
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35181..35795)
DNA (615bp) protein (205aa)
Rhomboid family protein Tax=Anaeromyxobacter sp. (strain K) RepID=B4UGP5_ANASK
rhomboid family protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM4_65_coex_sep16_scaffold_2_24
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35774..36676)
DNA (903bp) protein (301aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1YWA8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM4_65_coex_sep16_scaffold_2_25
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36780..37568)
DNA (789bp) protein (263aa)
Uncharacterized protein Tax=Nitrospina gracilis 3/211 RepID=M1YWA8_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
PLM4_65_coex_sep16_scaffold_2_26
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

37919..38140
DNA (222bp) protein (74aa)
Uncharacterized protein bin=GWC2_Nitrospirae-rel_56_14 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_27
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

38127..38345
DNA (219bp) protein (73aa)
Conserved domain protein bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_28
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(38368..38658)
DNA (291bp) protein (97aa)
id=3086061 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_29
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(38722..39639)
DNA (918bp) protein (306aa)
Acetoin utilization protein bin=GWC2_Nitrospirae-rel_56_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
acetoin utilization protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_coex_sep16_scaffold_2_30
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

Not on your lists

comp(39915..41135)
DNA (1221bp) protein (407aa)
HI0933 family protein bin=GWC2_Nitrospirae-rel_56_14 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
HI0933 family protein
Tax=GWC2_Nitrospirae_56_14_curated
Displaying items 1-30 of 210 in total

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