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PLM4_65_coex_sep16_scaffold_5311

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5311_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..347)
DNA (345bp) protein (115aa)
Ribonucleoside-diphosphate reductase Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GLT5_NITSI
ribonucleoside-diphosphate reductase subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_coex_sep16_scaffold_5311_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(601..1155)
DNA (555bp) protein (185aa)
N-acetyl-anhydromuranmyl-L-alanine amidase; K03806 AmpD protein bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_65_coex_sep16_scaffold_5311_3
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1156..2535)
DNA (1380bp) protein (460aa)
Helix-turn-helix, Fis-type Tax=Dechloromonas aromatica (strain RCB) RepID=Q47IB3_DECAR
two component sigma-54 specific Fis family transcriptional regulator
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2520..4115)
DNA (1596bp) protein (532aa)
Multi-sensor signal transduction histidine kinase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RNH6_ACCPU
histidine kinase
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4123..4338)
DNA (216bp) protein (72aa)
hypothetical protein
hypothetical protein; K06950 uncharacterized protein bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_65_coex_sep16_scaffold_5311_trna_1
unknown

Not on your lists

comp(4430..4503)
DNA (74bp)
transferRNA Pro
PLM4_65_coex_sep16_scaffold_5311_6
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4542..5471)
DNA (930bp) protein (310aa)
Geranylgeranyl pyrophosphate synthase Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QM66_AZOSU
geranylgeranyl pyrophosphate synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_65_coex_sep16_scaffold_5311_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5631..5945
DNA (315bp) protein (105aa)
50S ribosomal protein L21 Tax=Sulfuricella denitrificans skB26 RepID=S6AI71_9PROT
rplU; 50S ribosomal protein L21
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_8
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5973..6230
DNA (258bp) protein (86aa)
50S ribosomal protein L27 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=RL27_SACD2
rpmA; 50S ribosomal subunit protein L27
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6300..6590
DNA (291bp) protein (97aa)
Obg family GTPase CgtA Tax=mine drainage metagenome RepID=T1CIC9_9ZZZZ
GTP-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
PLM4_65_coex_sep16_scaffold_5311_10
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6593..7141
DNA (549bp) protein (183aa)
GTPase Obg Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=OBG_NITMU
obgE; GTPase ObgE
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_11
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7138..8223
DNA (1086bp) protein (362aa)
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CQK8_SIDLE
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_65_coex_sep16_scaffold_5311_12
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8314..8817)
DNA (504bp) protein (168aa)
CNP1-like family Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QME9_AZOSU
CNP1-like family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_65_coex_sep16_scaffold_5311_13
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8814..9395)
DNA (582bp) protein (194aa)
Uncharacterized protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y7Y1_NITMU
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_14
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9421..10749)
DNA (1329bp) protein (443aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI00035C138C
putative ferredoxin
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_coex_sep16_scaffold_5311_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10850..11269)
DNA (420bp) protein (140aa)
rubrerythrin Tax=Rhodocyclaceae RepID=UPI000361AF9E
rubrerythrin
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_65_coex_sep16_scaffold_5311_16
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11404..11913)
DNA (510bp) protein (170aa)
RNA pyrophosphohydrolase Tax=Limnobacter sp. MED105 RepID=A6GR45_9BURK
dinucleoside polyphosphate hydrolase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_65_coex_sep16_scaffold_5311_17
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12043..13746
DNA (1704bp) protein (568aa)
Proline--tRNA ligase Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUP2_ACCPU
prolyl-tRNA synthetase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_coex_sep16_scaffold_5311_18
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13846..14493
DNA (648bp) protein (216aa)
Lytic transglycosylase catalytic Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RUP1_ACCPU
lytic transglycosylase subunit
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_65_coex_sep16_scaffold_5311_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14397..15104)
DNA (708bp) protein (236aa)
orotidine 5''''-phosphate decarboxylase Tax=Methyloversatilis universalis RepID=UPI00036E327B
orotidine 5'-phosphate decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
PLM4_65_coex_sep16_scaffold_5311_20
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15148..16362)
DNA (1215bp) protein (405aa)
UPF0761 membrane protein SCD_n00827 Tax=Sulfuricella denitrificans skB26 RepID=S6ABF9_9PROT
ribonuclease BN
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM4_65_coex_sep16_scaffold_5311_21
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16510..18045)
DNA (1536bp) protein (512aa)
leuA; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase Tax=Sulfuricella denitrificans skB26 RepID=S6AJG1_9PROT
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_coex_sep16_scaffold_5311_22
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18239..19009)
DNA (771bp) protein (257aa)
pssA; CDP-diacylglycerol-serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-diacylglycerol--serine O-phosphatidyltransferase Tax=Burkholderia sp. JPY347 RepID=UPI000376C84A
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_65_coex_sep16_scaffold_5311_23
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19002..19655)
DNA (654bp) protein (218aa)
psd; phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=PSD_NITEU
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_coex_sep16_scaffold_5311_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19687..20703)
DNA (1017bp) protein (339aa)
ilvC; Ketol-acid reductoisomerase (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (EC:1.1.1.86)
ketol-acid reductoisomerase Tax=Caldimonas manganoxidans RepID=UPI000377C464
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_coex_sep16_scaffold_5311_25
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20792..21283)
DNA (492bp) protein (164aa)
Acetolactate synthase Tax=Cupriavidus sp. HPC(L) RepID=V2GEB8_9BURK
Acetolactate synthase {ECO:0000313|EMBL:ESH89197.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
ilvH; acetolactate synthase 3 regulatory subunit
Displaying 26 items

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