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PLM4_90_b1_sep16_scaffold_939

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_90_b1_sep16_scaffold_939_1
unknown

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comp(3..209)
DNA (207bp) protein (69aa)

This feature has no annotations

PLM4_90_b1_sep16_scaffold_939_2
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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501..929
DNA (429bp) protein (143aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein bin=GWC2_Nitrospirae_57_13 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=RBG_16_Deltaproteobacteria_47_11_curated
PLM4_90_b1_sep16_scaffold_939_3
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1180..1935
DNA (756bp) protein (252aa)
Transcriptional regulator, GntR family bin=GWC2_Spirochaete_52_13 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Spirochaete_52_13 organism_group=Spirochaetes
transcriptional regulator, GntR family
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM4_90_b1_sep16_scaffold_939_4
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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2286..3752
DNA (1467bp) protein (489aa)
dal:Dalk_4041 FAD linked oxidase domain protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
FAD linked oxidase domain-containing protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_90_b1_sep16_scaffold_939_5
RBG_16_Chloroflexi_56_11_curated, Chloroflexi, Bacteria

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3802..5064
DNA (1263bp) protein (421aa)
protein of unknown function DUF224 cysteine-rich region domain protein bin=RBG2 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=RBG2 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_56_11_curated
PLM4_90_b1_sep16_scaffold_939_6
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

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5083..6555
DNA (1473bp) protein (491aa)
FAD/FMN-containing dehydrogenase Tax=Clostridium sp. SY8519 RepID=F7V4A2_CLOSS bin=RBG2 species=Clostridium sp. SY8519 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG2 organism_group=Chloroflexi
GlcD; FAD/FMN-containing dehydrogenase
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_90_b1_sep16_scaffold_939_7
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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6805..7551
DNA (747bp) protein (249aa)
Tax=RBG_16_Chloroflexi_50_9_curated
PLM4_90_b1_sep16_scaffold_939_8
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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7684..8667
DNA (984bp) protein (328aa)
Short-chain dehydrogenase/reductase SDR Tax=Frankia sp. (strain EuI1c) RepID=E3J826_FRASU
short-chain dehydrogenase/reductase SDR
Tax=RBG_13_Chloroflexi_46_14_curated
PLM4_90_b1_sep16_scaffold_939_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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8847..10076
DNA (1230bp) protein (410aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter substrate-binding protein, HAAT family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_90_b1_sep16_scaffold_939_10
RBG_16_Chloroflexi_60_22_curated, Chloroflexi, Bacteria

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10443..11111
DNA (669bp) protein (223aa)
Tax=RBG_16_Chloroflexi_60_22_curated
PLM4_90_b1_sep16_scaffold_939_11
RBG_13_Chloroflexi_46_14_curated, Chloroflexi, Bacteria

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11535..12533
DNA (999bp) protein (333aa)
amidohydrolase 2 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
amidohydrolase 2
Tax=RBG_13_Chloroflexi_46_14_curated
PLM4_90_b1_sep16_scaffold_939_12
Hippea maritima, Hippea, Desulfurellales, Deltaproteobacteria, Proteobacteria, Bacteria

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12758..13897
DNA (1140bp) protein (380aa)
Extracellular ligand-binding receptor Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LWX3_HIPMA
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:AEA34157.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfurellales; Desulfurellaceae; Hippea.;" source="Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2).;"
PLM4_90_b1_sep16_scaffold_939_13
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14070..14951
DNA (882bp) protein (294aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
inner-membrane translocator
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_90_b1_sep16_scaffold_939_14
Bacillus badius, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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14954..15940
DNA (987bp) protein (329aa)
Branched-chain amino acid ABC transporter, permease protein Tax=Geobacillus thermoglucosidans TNO-09.020 RepID=I0UCJ2_GEOTM
Branched-chain amino acid transport system permease protein LivM {ECO:0000313|EMBL:KIL76962.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus badius.;"
ABC transporter
PLM4_90_b1_sep16_scaffold_939_15
Dialister succinatiphilus, Dialister, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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15980..16738
DNA (759bp) protein (253aa)
Putative uncharacterized protein Tax=Dialister succinatiphilus YIT 11850 RepID=H1CXD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO63967.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Dialister.;" source="Dialister succinatiphilus YIT 11850.;"
livG2; high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG
PLM4_90_b1_sep16_scaffold_939_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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16735..17460
DNA (726bp) protein (242aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3E5_GEOUR
ABC transporter-like protein
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:ABQ26313.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM4_90_b1_sep16_scaffold_939_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17685..18935
DNA (1251bp) protein (417aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_90_b1_sep16_scaffold_939_18
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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18970..19701
DNA (732bp) protein (244aa)
ABC transporter related protein Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RFJ6_ARCPA
ABC transporter
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b1_sep16_scaffold_939_19
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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19694..20413
DNA (720bp) protein (240aa)
ABC-type branched-chain amino acid transport system, ATPase component Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L543_KORCO
branched-chain amino acid ABC transporter ATPase
Tax=RBG_16_Chloroflexi_50_9_curated
PLM4_90_b1_sep16_scaffold_939_20
RBG_13_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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20413..21189
DNA (777bp) protein (259aa)
ABC-type transporter, integral membrane subunit bin=GWA2_Methylomirabilis_73_35 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=RBG_13_Deltaproteobacteria_47_9_curated
PLM4_90_b1_sep16_scaffold_939_21
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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21210..22133
DNA (924bp) protein (308aa)
Inner-membrane translocator bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM4_90_b1_sep16_scaffold_939_22

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comp(22031..22393)
DNA (363bp) protein (121aa)
Marine sediment metagenome DNA, contig: S01H4_L07331 {ECO:0000313|EMBL:GAG88647.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_90_b1_sep16_scaffold_939_23
CG_Syntroph_01, Syntrophus, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(22633..23754)
DNA (1122bp) protein (374aa)
Amidohydrolase 2 bin=GWC2_Syntrophus__56_31 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
amidohydrolase 2
Tax=CG_Syntroph_01
PLM4_90_b1_sep16_scaffold_939_24
RBG_19FT_COMBO_Syntrophobacterales_59_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23900..24205)
DNA (306bp) protein (102aa)
Uncharacterized protein UPF0065 bin=GWC2_Syntrophus__56_31 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
putative Bug-like extracytoplasmic solute binding receptor, TTT family
Tax=RBG_19FT_COMBO_Syntrophobacterales_59_10_curated
Displaying 24 items

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