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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 451-500 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_33999
Species: RBG_16_Deltaproteobacteria_50_11_curated (60%)
5 2566 bp 44.27 12.80 74.47
PLM4_90_b1_sep16_scaffold_23751
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 2510 bp 47.81 13.86 92.87
PLM4_90_b1_sep16_scaffold_5543
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 4090 bp 50.15 8.03 86.48
PLM4_90_b1_sep16_scaffold_20639
Class: Deltaproteobacteria (60%)
5 4200 bp 50.07 11.14 86.93
PLM4_90_b1_sep16_scaffold_8295
Class: Deltaproteobacteria (100%)
5 3350 bp 44.81 11.60 74.33
PLM4_90_b1_sep16_scaffold_6976
Species: RBG_13_Deltaproteobacteria_53_10_curated (60%)
5 3654 bp 49.73 16.26 95.73
PLM4_90_b1_sep16_scaffold_5032
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 6093 bp 48.43 12.85 79.07
PLM4_90_b1_sep16_scaffold_4777
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 4396 bp 48.11 12.76 93.84
PLM4_90_b1_sep16_scaffold_8053
Domain: Bacteria (80%)
5 4479 bp 50.48 12.53 84.19
PLM4_90_b1_sep16_scaffold_27294
Class: Deltaproteobacteria (80%)
5 3111 bp 42.66 8.58 86.50
PLM4_90_b1_sep16_scaffold_5055
Class: Deltaproteobacteria (60%)
5 4270 bp 46.21 14.40 76.02
PLM4_90_b1_sep16_scaffold_3391
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 5151 bp 48.28 15.55 73.03
PLM4_90_b1_sep16_scaffold_15231
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3234 bp 45.30 17.90 90.82
PLM4_90_b1_sep16_scaffold_46824
Class: Deltaproteobacteria (80%)
5 3195 bp 47.29 7.65 85.07
PLM4_90_b1_sep16_scaffold_6234
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 3865 bp 47.89 17.39 90.50
PLM4_90_b1_sep16_scaffold_25034
Species: BJP_IG2069_Desfulfarculales_53_13 (80%)
5 3415 bp 47.29 9.36 90.40
PLM4_90_b1_sep16_scaffold_8578
Species: RBG_13_Deltaproteobacteria_53_10_curated (80%)
5 4821 bp 52.08 14.72 90.98
PLM4_90_b1_sep16_scaffold_9371
Domain: Bacteria (80%)
5 3675 bp 49.14 10.20 91.21
PLM4_90_b1_sep16_scaffold_10420
Class: Deltaproteobacteria (60%)
5 5213 bp 50.30 7.19 90.01
PLM4_90_b1_sep16_scaffold_2862
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 5590 bp 48.14 19.56 87.21
PLM4_90_b1_sep16_scaffold_3142
Class: Deltaproteobacteria (100%)
5 5348 bp 53.33 11.22 92.00
PLM4_90_b1_sep16_scaffold_19362
Class: Deltaproteobacteria (100%)
5 2839 bp 42.83 12.68 56.32
PLM4_90_b1_sep16_scaffold_5837
Class: Deltaproteobacteria (100%)
5 4536 bp 46.72 14.48 89.48
PLM4_90_b1_sep16_scaffold_12374
Species: RBG_16_Deltaproteobacteria_49_23_curated (60%)
5 3677 bp 50.94 31.17 77.51
PLM4_90_b1_sep16_scaffold_26927
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 2881 bp 50.33 19.68 95.18
PLM4_90_b1_sep16_scaffold_9897
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3066 bp 47.68 12.13 96.28
PLM4_90_b1_sep16_scaffold_6762
Class: Deltaproteobacteria (60%)
5 4431 bp 45.79 20.62 88.63
PLM4_90_b1_sep16_scaffold_12890
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 2691 bp 49.42 16.28 75.81
PLM4_90_b1_sep16_scaffold_14611
Class: Deltaproteobacteria (100%)
5 3962 bp 48.89 12.08 77.84
PLM4_90_b1_sep16_scaffold_7707
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 3477 bp 46.10 12.60 91.37
PLM4_90_b1_sep16_scaffold_9388 5 3146 bp 45.61 18.55 75.24
PLM4_90_b1_sep16_scaffold_8341
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 3780 bp 47.01 18.77 86.11
PLM4_90_b1_sep16_scaffold_8095
Class: Deltaproteobacteria (80%)
5 5324 bp 47.93 17.24 87.73
PLM4_90_b1_sep16_scaffold_6008
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3935 bp 50.83 7.43 90.65
PLM4_90_b1_sep16_scaffold_6010
Species: RBG_16_Deltaproteobacteria_50_11_curated (60%)
5 4965 bp 52.21 13.84 75.89
PLM4_90_b1_sep16_scaffold_25578
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 3374 bp 48.61 7.56 96.56
PLM4_90_b1_sep16_scaffold_1971
Class: Deltaproteobacteria (100%)
5 6679 bp 48.67 18.17 92.39
PLM4_90_b1_sep16_scaffold_5091
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 4725 bp 48.47 13.68 90.10
PLM4_90_b1_sep16_scaffold_3172
Class: Deltaproteobacteria (80%)
5 5328 bp 45.66 18.13 85.30
PLM4_90_b1_sep16_scaffold_34366
Domain: Bacteria (80%)
5 3213 bp 48.33 6.12 89.73
PLM4_90_b1_sep16_scaffold_7215
Class: Deltaproteobacteria (60%)
5 3597 bp 48.18 10.30 63.47
PLM4_90_b1_sep16_scaffold_3175
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 5324 bp 49.81 15.81 86.04
PLM4_90_b1_sep16_scaffold_29490
Domain: Bacteria (80%)
5 2731 bp 48.77 12.30 93.70
PLM4_90_b1_sep16_scaffold_14634
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4737 bp 47.88 23.08 87.97
PLM4_90_b1_sep16_scaffold_8107
Class: Deltaproteobacteria (60%)
5 4426 bp 47.42 11.39 91.98
PLM4_90_b1_sep16_scaffold_1980
Domain: Bacteria (80%)
5 6664 bp 42.03 10.76 78.74
PLM4_90_b1_sep16_scaffold_7990
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3412 bp 47.39 17.54 81.77
PLM4_90_b1_sep16_scaffold_9671
Class: Deltaproteobacteria (60%)
5 3104 bp 45.36 18.70 80.32
PLM4_90_b1_sep16_scaffold_9416
Class: Deltaproteobacteria (60%)
5 3142 bp 47.04 13.70 71.71
PLM4_90_b1_sep16_scaffold_4329
Domain: Bacteria (80%)
5 4609 bp 50.92 9.99 83.64
Displaying items 451-500 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.