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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 401-450 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_17345
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 3325 bp 45.86 17.23 76.42
PLM4_90_b1_sep16_scaffold_14738
Class: Deltaproteobacteria (60%)
5 3352 bp 49.40 12.49 72.67
PLM4_90_b1_sep16_scaffold_25179
Class: Deltaproteobacteria (60%)
5 2687 bp 42.20 5.36 99.14
PLM4_90_b1_sep16_scaffold_14483
Class: Deltaproteobacteria (60%)
5 4701 bp 44.76 12.64 61.84
PLM4_90_b1_sep16_scaffold_14739
Class: Deltaproteobacteria (80%)
5 4224 bp 51.75 14.31 80.68
PLM4_90_b1_sep16_scaffold_12507
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 4168 bp 47.55 11.19 95.51
PLM4_90_b1_sep16_scaffold_11403
Class: Deltaproteobacteria (80%)
5 2857 bp 44.87 12.02 47.99
PLM4_90_b1_sep16_scaffold_10569
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 4000 bp 50.18 11.63 95.18
PLM4_90_b1_sep16_scaffold_22115
Class: Deltaproteobacteria (80%)
5 3880 bp 49.43 8.31 94.95
PLM4_90_b1_sep16_scaffold_20566
Species: RBG_16_Deltaproteobacteria_49_23_curated (60%)
5 3490 bp 46.82 8.51 89.14
PLM4_90_b1_sep16_scaffold_3038
Class: Deltaproteobacteria (100%)
5 5431 bp 47.27 15.69 92.63
PLM4_90_b1_sep16_scaffold_5983 5 5281 bp 50.98 10.31 73.74
PLM4_90_b1_sep16_scaffold_11673
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 4394 bp 46.61 7.54 89.44
PLM4_90_b1_sep16_scaffold_5987
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 4632 bp 52.50 8.32 90.29
PLM4_90_b1_sep16_scaffold_18861
Class: Deltaproteobacteria (60%)
5 3071 bp 46.40 14.90 64.57
PLM4_90_b1_sep16_scaffold_4448
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 4555 bp 46.41 19.46 81.73
PLM4_90_b1_sep16_scaffold_22128
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 3592 bp 48.72 7.14 54.70
PLM4_90_b1_sep16_scaffold_14763
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 2506 bp 46.69 8.26 95.29
PLM4_90_b1_sep16_scaffold_16156
Class: Deltaproteobacteria (80%)
5 4477 bp 50.06 10.79 89.46
PLM4_90_b1_sep16_scaffold_18871
Domain: Bacteria (60%)
5 3329 bp 51.31 6.98 97.33
PLM4_90_b1_sep16_scaffold_4456
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 4551 bp 47.53 13.05 78.11
PLM4_90_b1_sep16_scaffold_17120
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 3791 bp 47.43 16.18 84.99
PLM4_90_b1_sep16_scaffold_16929
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 2948 bp 48.34 15.88 91.59
PLM4_90_b1_sep16_scaffold_5235
Class: Deltaproteobacteria (60%)
5 4200 bp 46.74 16.21 90.79
PLM4_90_b1_sep16_scaffold_6413
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 3812 bp 50.42 8.70 99.00
PLM4_90_b1_sep16_scaffold_2781
Domain: Bacteria (80%)
5 5674 bp 43.73 8.20 87.22
PLM4_90_b1_sep16_scaffold_3317
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 5212 bp 44.99 15.14 70.34
PLM4_90_b1_sep16_scaffold_4978
Class: Deltaproteobacteria (80%)
5 4300 bp 50.47 14.23 88.67
PLM4_90_b1_sep16_scaffold_14266
Class: Deltaproteobacteria (60%)
5 4004 bp 44.66 7.87 59.79
PLM4_90_b1_sep16_scaffold_8252
Species: RBG_13_Deltaproteobacteria_43_22_curated (60%)
5 3359 bp 49.75 14.56 78.06
PLM4_90_b1_sep16_scaffold_24142
Phylum: Proteobacteria (60%)
5 4022 bp 48.23 6.90 85.85
PLM4_90_b1_sep16_scaffold_7111
Domain: Bacteria (60%)
5 3624 bp 48.15 8.73 85.60
PLM4_90_b1_sep16_scaffold_13439
Class: Deltaproteobacteria (80%)
5 3611 bp 46.50 13.42 88.31
PLM4_90_b1_sep16_scaffold_10864
Class: Deltaproteobacteria (60%)
5 4329 bp 52.76 8.87 92.65
PLM4_90_b1_sep16_scaffold_4225
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 4658 bp 51.07 9.76 86.43
PLM4_90_b1_sep16_scaffold_30753 5 2711 bp 48.32 16.54 55.88
PLM4_90_b1_sep16_scaffold_10875
Class: Deltaproteobacteria (80%)
5 2927 bp 44.35 10.86 83.53
PLM4_90_b1_sep16_scaffold_43956
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 3479 bp 47.74 8.67 74.85
PLM4_90_b1_sep16_scaffold_2550
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
5 7487 bp 50.50 6.79 91.28
PLM4_90_b1_sep16_scaffold_41609
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3160 bp 48.07 13.29 95.51
PLM4_90_b1_sep16_scaffold_6186
Class: Deltaproteobacteria (60%)
5 5066 bp 50.85 9.39 95.58
PLM4_90_b1_sep16_scaffold_6954
Class: Deltaproteobacteria (100%)
5 5108 bp 48.83 14.54 82.69
PLM4_90_b1_sep16_scaffold_7130
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 3619 bp 48.80 15.17 93.67
PLM4_90_b1_sep16_scaffold_3348
Species: RBG_19FT_COMBO_Syntrophobacterales_59_10_curated (60%)
5 5182 bp 52.12 18.64 85.80
PLM4_90_b1_sep16_scaffold_9581
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4147 bp 47.17 13.49 76.32
PLM4_90_b1_sep16_scaffold_19055
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 2765 bp 46.40 8.41 76.06
PLM4_90_b1_sep16_scaffold_10119
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 6593 bp 46.14 14.24 73.62
PLM4_90_b1_sep16_scaffold_5787
Species: RBG_13_Deltaproteobacteria_52_11_curated (60%)
5 4013 bp 48.92 6.80 87.99
PLM4_90_b1_sep16_scaffold_3105
Phylum: Proteobacteria (60%)
5 5376 bp 52.18 8.31 92.47
PLM4_90_b1_sep16_scaffold_5028
Domain: Bacteria (80%)
5 4280 bp 48.32 17.38 80.40
Displaying items 401-450 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.