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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_15025
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 2945 bp 45.30 15.84 76.10
PLM4_90_b1_sep16_scaffold_2651
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
6 5794 bp 49.72 12.14 91.85
PLM4_90_b1_sep16_scaffold_5109
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
6 4991 bp 50.33 16.71 90.04
PLM4_90_b1_sep16_scaffold_14651
Class: Deltaproteobacteria (66.67%)
6 2515 bp 44.77 12.05 84.21
PLM4_90_b1_sep16_scaffold_4598
Species: RBG_19FT_COMBO_Chloroflexi_48_23_curated (50%)
6 6788 bp 50.88 12.77 88.57
PLM4_90_b1_sep16_scaffold_6039
Class: Deltaproteobacteria (50%)
6 3925 bp 44.48 10.01 82.85
PLM4_90_b1_sep16_scaffold_4344
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 5591 bp 47.95 15.51 92.40
PLM4_90_b1_sep16_scaffold_6553
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
6 5755 bp 46.03 10.19 73.14
PLM4_90_b1_sep16_scaffold_4602
Class: Deltaproteobacteria (66.67%)
6 6985 bp 50.59 8.48 87.87
PLM4_90_b1_sep16_scaffold_2668
Class: Gammaproteobacteria (50%)
6 5780 bp 51.23 12.22 91.56
PLM4_90_b1_sep16_scaffold_9692
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 5608 bp 47.86 18.11 89.76
PLM4_90_b1_sep16_scaffold_8135
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 4378 bp 47.78 12.54 90.25
PLM4_90_b1_sep16_scaffold_2927
Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)
6 7719 bp 50.69 8.80 96.15
PLM4_90_b1_sep16_scaffold_10487 6 3653 bp 41.72 11.46 84.92
PLM4_90_b1_sep16_scaffold_7761
Class: Deltaproteobacteria (83.33%)
6 4978 bp 43.99 10.52 84.37
PLM4_90_b1_sep16_scaffold_24031
Class: Deltaproteobacteria (100%)
6 3331 bp 50.59 6.57 84.30
PLM4_90_b1_sep16_scaffold_23088
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 3627 bp 48.55 13.36 68.32
PLM4_90_b1_sep16_scaffold_6827
Class: Deltaproteobacteria (66.67%)
6 5564 bp 44.97 13.53 82.23
PLM4_90_b1_sep16_scaffold_23603
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (100%)
6 5165 bp 47.96 15.30 77.48
PLM4_90_b1_sep16_scaffold_37900
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
6 3910 bp 47.95 14.19 77.34
PLM4_90_b1_sep16_scaffold_6317
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
6 5087 bp 53.45 9.26 95.77
PLM4_90_b1_sep16_scaffold_10248
Class: Deltaproteobacteria (50%)
6 3559 bp 44.56 13.02 84.07
PLM4_90_b1_sep16_scaffold_14426
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 4231 bp 47.36 14.71 87.43
PLM4_90_b1_sep16_scaffold_8416
Class: Deltaproteobacteria (100%)
6 5744 bp 47.77 12.17 71.14
PLM4_90_b1_sep16_scaffold_21626 6 4119 bp 40.96 7.54 48.43
PLM4_90_b1_sep16_scaffold_1267
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 8039 bp 48.08 10.86 89.82
PLM4_90_b1_sep16_scaffold_8933
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 5818 bp 48.59 16.22 77.81
PLM4_90_b1_sep16_scaffold_4905
Class: Deltaproteobacteria (83.33%)
6 4332 bp 47.60 10.39 90.93
PLM4_90_b1_sep16_scaffold_8946
Class: Deltaproteobacteria (50%)
6 4367 bp 46.19 9.24 81.96
PLM4_90_b1_sep16_scaffold_35141 6 3341 bp 46.66 5.70 65.64
PLM4_90_b1_sep16_scaffold_5174
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
6 4225 bp 48.57 12.39 86.70
PLM4_90_b1_sep16_scaffold_9488
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 3130 bp 47.67 17.83 96.04
PLM4_90_b1_sep16_scaffold_9745
Class: Deltaproteobacteria (80%)
5 4665 bp 49.80 14.34 90.80
PLM4_90_b1_sep16_scaffold_11635
Species: RBG_13_Deltaproteobacteria_53_10_curated (80%)
5 4796 bp 47.94 8.41 72.69
PLM4_90_b1_sep16_scaffold_18308
Class: Deltaproteobacteria (100%)
5 3394 bp 47.17 10.25 86.71
PLM4_90_b1_sep16_scaffold_5183
Class: Deltaproteobacteria (80%)
5 5637 bp 47.76 14.45 68.60
PLM4_90_b1_sep16_scaffold_7562
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3510 bp 47.89 14.66 98.03
PLM4_90_b1_sep16_scaffold_21402
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3806 bp 44.64 7.21 79.69
PLM4_90_b1_sep16_scaffold_8708
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
5 3270 bp 43.21 8.58 90.18
PLM4_90_b1_sep16_scaffold_3012
Domain: Bacteria (100%)
5 5449 bp 51.44 11.97 86.49
PLM4_90_b1_sep16_scaffold_17589
Domain: Bacteria (80%)
5 2624 bp 44.63 7.60 76.14
PLM4_90_b1_sep16_scaffold_7825
Class: Deltaproteobacteria (100%)
5 3448 bp 45.91 19.45 85.96
PLM4_90_b1_sep16_scaffold_22354
Species: RBG_16_Deltaproteobacteria_47_11_curated (60%)
5 2862 bp 46.44 14.62 85.53
PLM4_90_b1_sep16_scaffold_6373
Class: Deltaproteobacteria (60%)
5 5061 bp 45.09 12.69 83.94
PLM4_90_b1_sep16_scaffold_64374
Class: Deltaproteobacteria (80%)
5 2608 bp 50.69 9.84 71.01
PLM4_90_b1_sep16_scaffold_8718
Domain: Bacteria (60%)
5 3268 bp 42.32 10.83 77.02
PLM4_90_b1_sep16_scaffold_10303
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 3010 bp 46.18 12.66 98.07
PLM4_90_b1_sep16_scaffold_22616 5 2874 bp 46.94 16.91 35.49
PLM4_90_b1_sep16_scaffold_8464
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 4382 bp 46.51 14.58 81.68
PLM4_90_b1_sep16_scaffold_6889
Domain: Bacteria (80%)
5 3681 bp 46.21 12.31 85.09
Displaying items 351-400 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.