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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 501-550 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_20783
Species: RBG_16_Chloroflexi_60_22_curated (50%)
2 3419 bp 55.51 11.76 94.59
PLM4_90_b1_sep16_scaffold_12845
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
3 2696 bp 48.70 11.74 93.36
PLM4_90_b1_sep16_scaffold_10964
Class: Deltaproteobacteria (66.67%)
3 2913 bp 53.14 11.74 93.00
PLM4_90_b1_sep16_scaffold_6415
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (57.14%)
7 6239 bp 47.75 11.73 86.74
PLM4_90_b1_sep16_scaffold_2922
Species: RBG_16_Deltaproteobacteria_47_11_curated (71.43%)
7 5530 bp 46.15 11.72 69.87
PLM4_90_b1_sep16_scaffold_13828
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 2591 bp 47.28 11.69 71.67
PLM4_90_b1_sep16_scaffold_8399
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
10 8569 bp 49.18 11.69 94.21
PLM4_90_b1_sep16_scaffold_4750
Class: Deltaproteobacteria (71.43%)
14 11173 bp 46.93 11.67 89.04
PLM4_90_b1_sep16_scaffold_2820
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
6 5628 bp 51.00 11.67 77.77
PLM4_90_b1_sep16_scaffold_9248
Class: Phycisphaerae (66.67%)
3 3170 bp 58.90 11.64 84.42
PLM4_90_b1_sep16_scaffold_11018
Class: Deltaproteobacteria (100%)
3 4071 bp 44.98 11.64 77.08
PLM4_90_b1_sep16_scaffold_10569
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 4000 bp 50.18 11.63 95.18
PLM4_90_b1_sep16_scaffold_4415
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (83.33%)
6 4570 bp 48.16 11.62 81.60
PLM4_90_b1_sep16_scaffold_11008
Class: Deltaproteobacteria (71.43%)
7 3577 bp 44.25 11.62 69.78
PLM4_90_b1_sep16_scaffold_12908
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 4263 bp 48.25 11.61 85.64
PLM4_90_b1_sep16_scaffold_8295
Class: Deltaproteobacteria (100%)
5 3350 bp 44.81 11.60 74.33
PLM4_90_b1_sep16_scaffold_25105
Class: Deltaproteobacteria (66.67%)
3 3001 bp 50.48 11.60 76.77
PLM4_90_b1_sep16_scaffold_9024
Species: RBG_13_Deltaproteobacteria_47_9_curated (66.67%)
3 3212 bp 50.53 11.58 82.66
PLM4_90_b1_sep16_scaffold_14849
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 4591 bp 50.58 11.57 50.51
PLM4_90_b1_sep16_scaffold_86
Phylum: Proteobacteria (56%)
25 28146 bp 47.84 11.56 85.43
PLM4_90_b1_sep16_scaffold_10113
Class: Deltaproteobacteria (75%)
8 5814 bp 51.03 11.53 84.42
PLM4_90_b1_sep16_scaffold_7931
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3424 bp 48.04 11.52 78.86
PLM4_90_b1_sep16_scaffold_10504
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 3685 bp 45.26 11.52 76.12
PLM4_90_b1_sep16_scaffold_9652
Class: Deltaproteobacteria (100%)
4 3107 bp 47.41 11.49 88.45
PLM4_90_b1_sep16_scaffold_10705
Species: RBG_13_Deltaproteobacteria_47_9_curated (66.67%)
3 2951 bp 47.81 11.49 73.81
PLM4_90_b1_sep16_scaffold_1412
Phylum: Proteobacteria (57.14%)
7 7710 bp 50.35 11.46 70.82
PLM4_90_b1_sep16_scaffold_10487 6 3653 bp 41.72 11.46 84.92
PLM4_90_b1_sep16_scaffold_6240
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 3863 bp 48.25 11.45 88.69
PLM4_90_b1_sep16_scaffold_1003
Class: Deltaproteobacteria (55.56%)
9 8809 bp 41.76 11.44 84.25
PLM4_90_b1_sep16_scaffold_4921
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
6 4677 bp 45.29 11.42 79.73
PLM4_90_b1_sep16_scaffold_8107
Class: Deltaproteobacteria (60%)
5 4426 bp 47.42 11.39 91.98
PLM4_90_b1_sep16_scaffold_5009
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 4288 bp 48.30 11.37 89.76
PLM4_90_b1_sep16_scaffold_18989
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
2 3616 bp 46.96 11.37 50.94
PLM4_90_b1_sep16_scaffold_2116
Species: RBG_16_Deltaproteobacteria_47_11_curated (57.14%)
7 6442 bp 44.58 11.36 85.32
PLM4_90_b1_sep16_scaffold_27572
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 2639 bp 50.36 11.31 77.30
PLM4_90_b1_sep16_scaffold_7988
Phylum: Rokubacteria (66.67%)
3 3412 bp 45.49 11.30 70.60
PLM4_90_b1_sep16_scaffold_7528
Species: RBG_13_Chloroflexi_53_26_curated (50%)
2 3521 bp 50.64 11.29 80.18
PLM4_90_b1_sep16_scaffold_809
Class: Deltaproteobacteria (50%)
10 10819 bp 54.18 11.27 92.12
PLM4_90_b1_sep16_scaffold_6629
Species: bacterium UASB270 (66.67%)
3 3745 bp 50.33 11.26 79.71
PLM4_90_b1_sep16_scaffold_11218
Class: Deltaproteobacteria (66.67%)
9 5353 bp 47.15 11.26 77.34
PLM4_90_b1_sep16_scaffold_10175
Species: RBG_13_Deltaproteobacteria_53_10_curated (75%)
4 3029 bp 51.47 11.24 95.08
PLM4_90_b1_sep16_scaffold_11105
Species: RBG_13_Deltaproteobacteria_52_11_curated (66.67%)
3 2897 bp 47.88 11.24 97.03
PLM4_90_b1_sep16_scaffold_22124
Class: Deltaproteobacteria (100%)
3 3099 bp 48.40 11.23 84.61
PLM4_90_b1_sep16_scaffold_4247
Domain: Bacteria (85.71%)
7 4651 bp 47.13 11.22 60.76
PLM4_90_b1_sep16_scaffold_3142
Class: Deltaproteobacteria (100%)
5 5348 bp 53.33 11.22 92.00
PLM4_90_b1_sep16_scaffold_22477
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
6 3144 bp 48.73 11.21 80.60
PLM4_90_b1_sep16_scaffold_40027
Class: Deltaproteobacteria (100%)
5 2515 bp 49.82 11.21 81.47
PLM4_90_b1_sep16_scaffold_24280
Class: Deltaproteobacteria (71.43%)
7 4527 bp 42.15 11.20 59.24
PLM4_90_b1_sep16_scaffold_12507
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 4168 bp 47.55 11.19 95.51
PLM4_90_b1_sep16_scaffold_14581
Class: Deltaproteobacteria (62.5%)
8 4690 bp 45.10 11.19 55.46
Displaying items 501-550 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.