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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 551-600 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_9518
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 3126 bp 48.85 11.18 89.06
PLM4_90_b1_sep16_scaffold_1632
Class: Deltaproteobacteria (66.67%)
9 7238 bp 48.08 11.15 93.05
PLM4_90_b1_sep16_scaffold_20639
Class: Deltaproteobacteria (60%)
5 4200 bp 50.07 11.14 86.93
PLM4_90_b1_sep16_scaffold_286
Class: Deltaproteobacteria (66.67%)
15 13554 bp 46.89 11.14 82.87
PLM4_90_b1_sep16_scaffold_11064
Domain: Bacteria (66.67%)
3 3279 bp 52.12 11.12 80.70
PLM4_90_b1_sep16_scaffold_2413
Class: Deltaproteobacteria (75%)
8 7772 bp 51.17 11.12 81.79
PLM4_90_b1_sep16_scaffold_14272
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 4119 bp 51.20 11.11 83.32
PLM4_90_b1_sep16_scaffold_12473
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 2733 bp 49.98 11.09 90.34
PLM4_90_b1_sep16_scaffold_295
Class: Deltaproteobacteria (63.64%)
11 14343 bp 49.06 11.08 87.37
PLM4_90_b1_sep16_scaffold_14176
Species: RBG_13_Deltaproteobacteria_53_10_curated (66.67%)
3 2558 bp 51.41 11.08 83.74
PLM4_90_b1_sep16_scaffold_6333
Class: Deltaproteobacteria (75%)
4 3832 bp 43.19 11.04 81.03
PLM4_90_b1_sep16_scaffold_4830
Domain: Bacteria (100%)
3 4368 bp 49.06 11.02 87.36
PLM4_90_b1_sep16_scaffold_13425
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 3173 bp 46.14 11.01 77.81
PLM4_90_b1_sep16_scaffold_4379
Class: Deltaproteobacteria (66.67%)
3 4590 bp 54.29 11.01 92.22
PLM4_90_b1_sep16_scaffold_27195
Class: Deltaproteobacteria (100%)
3 2617 bp 46.24 11.00 66.26
PLM4_90_b1_sep16_scaffold_1739
Class: Deltaproteobacteria (57.14%)
7 7047 bp 43.79 11.00 52.36
PLM4_90_b1_sep16_scaffold_14662
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 4971 bp 47.56 10.98 87.33
PLM4_90_b1_sep16_scaffold_1438
Class: Deltaproteobacteria (69.23%)
13 12677 bp 49.55 10.97 85.67
PLM4_90_b1_sep16_scaffold_3075
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
6 5405 bp 48.23 10.93 94.47
PLM4_90_b1_sep16_scaffold_18739
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 2764 bp 46.74 10.91 82.92
PLM4_90_b1_sep16_scaffold_25228
Class: Deltaproteobacteria (75%)
4 2863 bp 47.99 10.90 88.86
PLM4_90_b1_sep16_scaffold_15799
Class: Deltaproteobacteria (85.71%)
7 3226 bp 47.99 10.88 52.73
PLM4_90_b1_sep16_scaffold_10875
Class: Deltaproteobacteria (80%)
5 2927 bp 44.35 10.86 83.53
PLM4_90_b1_sep16_scaffold_17155
Class: Deltaproteobacteria (57.14%)
7 6103 bp 46.21 10.86 66.66
PLM4_90_b1_sep16_scaffold_1267
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 8039 bp 48.08 10.86 89.82
PLM4_90_b1_sep16_scaffold_8718
Domain: Bacteria (60%)
5 3268 bp 42.32 10.83 77.02
PLM4_90_b1_sep16_scaffold_7877
Domain: Bacteria (66.67%)
3 3439 bp 50.31 10.82 85.49
PLM4_90_b1_sep16_scaffold_8777
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (57.14%)
7 4747 bp 49.04 10.81 89.87
PLM4_90_b1_sep16_scaffold_23436
Species: RBG_13_Deltaproteobacteria_52_11b_curated (50%)
2 3611 bp 48.99 10.80 45.69
PLM4_90_b1_sep16_scaffold_11922
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 2795 bp 45.94 10.79 90.48
PLM4_90_b1_sep16_scaffold_16156
Class: Deltaproteobacteria (80%)
5 4477 bp 50.06 10.79 89.46
PLM4_90_b1_sep16_scaffold_29778
Species: RBG_16_Deltaproteobacteria_48_10_curated (75%)
4 3018 bp 54.37 10.79 83.90
PLM4_90_b1_sep16_scaffold_10047
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 4428 bp 46.66 10.77 69.58
PLM4_90_b1_sep16_scaffold_11134
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
8 6244 bp 47.92 10.76 77.93
PLM4_90_b1_sep16_scaffold_1980
Domain: Bacteria (80%)
5 6664 bp 42.03 10.76 78.74
PLM4_90_b1_sep16_scaffold_8643
Class: Deltaproteobacteria (80%)
10 9551 bp 47.31 10.73 76.45
PLM4_90_b1_sep16_scaffold_8984 6 3219 bp 46.54 10.72 63.93
PLM4_90_b1_sep16_scaffold_16707
Phylum: Proteobacteria (50%)
6 5600 bp 48.77 10.69 56.09
PLM4_90_b1_sep16_scaffold_8300
Class: Deltaproteobacteria (83.33%)
6 3348 bp 46.57 10.66 84.14
PLM4_90_b1_sep16_scaffold_13087
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (60%)
10 6854 bp 47.32 10.59 86.05
PLM4_90_b1_sep16_scaffold_4351
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
1 4601 bp 53.01 10.56 93.11
PLM4_90_b1_sep16_scaffold_15833
Class: Deltaproteobacteria (60%)
5 3470 bp 48.10 10.55 96.92
PLM4_90_b1_sep16_scaffold_9489
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
4 3130 bp 42.84 10.54 83.77
PLM4_90_b1_sep16_scaffold_2054
Domain: Bacteria (78.57%)
14 6551 bp 48.56 10.53 72.54
PLM4_90_b1_sep16_scaffold_16847
Class: Deltaproteobacteria (60%)
5 4530 bp 48.21 10.53 85.70
PLM4_90_b1_sep16_scaffold_7761
Class: Deltaproteobacteria (83.33%)
6 4978 bp 43.99 10.52 84.37
PLM4_90_b1_sep16_scaffold_4399
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
5 4580 bp 48.49 10.51 64.13
PLM4_90_b1_sep16_scaffold_35050
Species: RBG_16_Deltaproteobacteria_50_11_curated (66.67%)
3 2678 bp 50.93 10.47 78.86
PLM4_90_b1_sep16_scaffold_22021
Class: Deltaproteobacteria (50%)
8 4073 bp 46.65 10.42 66.29
PLM4_90_b1_sep16_scaffold_9499
Class: Deltaproteobacteria (100%)
7 4725 bp 47.13 10.41 90.98
Displaying items 551-600 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.