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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 401-450 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_8179
Phylum: Chloroflexi (75%)
4 5433 bp 50.69 12.89 93.87
PLM4_90_b1_sep16_scaffold_14077
Species: RBG_16_Deltaproteobacteria_49_23_curated (66.67%)
3 4231 bp 47.13 12.87 63.74
PLM4_90_b1_sep16_scaffold_33032
Class: Deltaproteobacteria (50%)
4 2832 bp 48.45 12.87 78.28
PLM4_90_b1_sep16_scaffold_19714
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
4 3289 bp 48.46 12.86 86.47
PLM4_90_b1_sep16_scaffold_20283
Class: Deltaproteobacteria (85.71%)
7 3874 bp 49.77 12.85 92.08
PLM4_90_b1_sep16_scaffold_5032
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (80%)
5 6093 bp 48.43 12.85 79.07
PLM4_90_b1_sep16_scaffold_13352
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 2638 bp 47.23 12.85 91.55
PLM4_90_b1_sep16_scaffold_3623
Species: RBG_16_Spirochaetes_49_21_curated (50%)
8 8688 bp 52.23 12.81 86.50
PLM4_90_b1_sep16_scaffold_3573
Species: RBG_16_Deltaproteobacteria_47_11_curated (75%)
8 5026 bp 48.27 12.80 82.97
PLM4_90_b1_sep16_scaffold_33999
Species: RBG_16_Deltaproteobacteria_50_11_curated (60%)
5 2566 bp 44.27 12.80 74.47
PLM4_90_b1_sep16_scaffold_3018
Class: Deltaproteobacteria (54.55%)
11 8840 bp 46.33 12.79 76.12
PLM4_90_b1_sep16_scaffold_1967
Class: Deltaproteobacteria (85.71%)
7 6680 bp 48.68 12.78 86.27
PLM4_90_b1_sep16_scaffold_4598
Species: RBG_19FT_COMBO_Chloroflexi_48_23_curated (50%)
6 6788 bp 50.88 12.77 88.57
PLM4_90_b1_sep16_scaffold_7314
Species: RBG_16_Deltaproteobacteria_48_10_curated (100%)
8 6162 bp 46.72 12.76 83.25
PLM4_90_b1_sep16_scaffold_2782
Domain: Bacteria (85.71%)
7 7688 bp 52.21 12.76 91.66
PLM4_90_b1_sep16_scaffold_4777
Species: RBG_16_Deltaproteobacteria_48_10_curated (80%)
5 4396 bp 48.11 12.76 93.84
PLM4_90_b1_sep16_scaffold_10458
Class: Deltaproteobacteria (100%)
4 2986 bp 50.17 12.76 88.31
PLM4_90_b1_sep16_scaffold_48674
Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)
4 3364 bp 51.28 12.75 92.39
PLM4_90_b1_sep16_scaffold_9562
Class: Deltaproteobacteria (75%)
4 3119 bp 51.33 12.74 77.14
PLM4_90_b1_sep16_scaffold_8516
Order: Desulfarculales (50%)
6 5405 bp 50.79 12.74 85.09
PLM4_90_b1_sep16_scaffold_1379
Domain: Bacteria (84.62%)
13 7774 bp 42.54 12.73 56.57
PLM4_90_b1_sep16_scaffold_4283
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
4 5739 bp 45.60 12.73 80.14
PLM4_90_b1_sep16_scaffold_3682
Class: Deltaproteobacteria (83.33%)
6 4967 bp 46.27 12.71 80.39
PLM4_90_b1_sep16_scaffold_6373
Class: Deltaproteobacteria (60%)
5 5061 bp 45.09 12.69 83.94
PLM4_90_b1_sep16_scaffold_642
Species: RBG_16_Deltaproteobacteria_49_23_curated (55.56%)
9 10319 bp 48.83 12.69 85.36
PLM4_90_b1_sep16_scaffold_19362
Class: Deltaproteobacteria (100%)
5 2839 bp 42.83 12.68 56.32
PLM4_90_b1_sep16_scaffold_1709
Class: Deltaproteobacteria (100%)
10 9123 bp 52.65 12.68 83.06
PLM4_90_b1_sep16_scaffold_3874
Species: RBG_16_Deltaproteobacteria_48_10_curated (71.43%)
7 4855 bp 45.52 12.67 57.47
PLM4_90_b1_sep16_scaffold_10303
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 3010 bp 46.18 12.66 98.07
PLM4_90_b1_sep16_scaffold_28354
Class: Deltaproteobacteria (71.43%)
7 2789 bp 40.37 12.64 78.95
PLM4_90_b1_sep16_scaffold_14483
Class: Deltaproteobacteria (60%)
5 4701 bp 44.76 12.64 61.84
PLM4_90_b1_sep16_scaffold_19225
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
4 3111 bp 48.96 12.63 80.91
PLM4_90_b1_sep16_scaffold_11264
Phylum: Proteobacteria (66.67%)
3 2877 bp 52.97 12.62 88.53
PLM4_90_b1_sep16_scaffold_44669
Class: Deltaproteobacteria (66.67%)
3 3095 bp 43.91 12.60 85.59
PLM4_90_b1_sep16_scaffold_7707
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 3477 bp 46.10 12.60 91.37
PLM4_90_b1_sep16_scaffold_8057
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 4137 bp 46.34 12.55 69.33
PLM4_90_b1_sep16_scaffold_6444
Domain: Bacteria (85.71%)
7 3804 bp 45.03 12.54 80.99
PLM4_90_b1_sep16_scaffold_7905
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 3432 bp 46.62 12.54 83.48
PLM4_90_b1_sep16_scaffold_8135
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 4378 bp 47.78 12.54 90.25
PLM4_90_b1_sep16_scaffold_13637
Class: Deltaproteobacteria (100%)
3 2609 bp 48.52 12.53 74.63
PLM4_90_b1_sep16_scaffold_8053
Domain: Bacteria (80%)
5 4479 bp 50.48 12.53 84.19
PLM4_90_b1_sep16_scaffold_14003
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
3 2575 bp 48.19 12.52 93.20
PLM4_90_b1_sep16_scaffold_24096
Species: RBG_16_Deltaproteobacteria_48_10_curated (50%)
4 2649 bp 50.77 12.51 78.94
PLM4_90_b1_sep16_scaffold_4396
Class: Deltaproteobacteria (85.71%)
7 6050 bp 50.38 12.50 76.07
PLM4_90_b1_sep16_scaffold_6620
Domain: Bacteria (66.67%)
3 3748 bp 48.85 12.49 70.68
PLM4_90_b1_sep16_scaffold_14738
Class: Deltaproteobacteria (60%)
5 3352 bp 49.40 12.49 72.67
PLM4_90_b1_sep16_scaffold_4498
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 4528 bp 43.93 12.49 90.83
PLM4_90_b1_sep16_scaffold_5288
Class: Deltaproteobacteria (100%)
7 6849 bp 46.52 12.48 60.75
PLM4_90_b1_sep16_scaffold_3070
Class: Deltaproteobacteria (100%)
7 6313 bp 49.17 12.47 80.74
PLM4_90_b1_sep16_scaffold_1117
Class: Deltaproteobacteria (70%)
20 18469 bp 48.42 12.45 90.93
Displaying items 401-450 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.