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PLM4_90_b1_sep16_Deltaproteobacteria_48_13

PLM4_90cm_b1_sep2016_Deltaproteobacteria_48_13
In projects: PLM4_90cm_b1_sep2016  |  ERML-PLM4  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 351-400 of 889 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_90_b1_sep16_scaffold_7059
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
6 5795 bp 47.63 13.64 51.56
PLM4_90_b1_sep16_scaffold_14002
Species: RBG_16_Deltaproteobacteria_49_23_curated (66.67%)
3 2575 bp 47.18 13.63 91.92
PLM4_90_b1_sep16_scaffold_1585
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
6 7317 bp 48.38 13.59 86.76
PLM4_90_b1_sep16_scaffold_2606
Class: Deltaproteobacteria (85.71%)
7 5831 bp 50.97 13.56 88.54
PLM4_90_b1_sep16_scaffold_11969
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
2 2790 bp 49.18 13.55 83.55
PLM4_90_b1_sep16_scaffold_11287
Species: RBG_16_Deltaproteobacteria_48_10_curated (83.33%)
6 4893 bp 48.44 13.55 83.81
PLM4_90_b1_sep16_scaffold_6827
Class: Deltaproteobacteria (66.67%)
6 5564 bp 44.97 13.53 82.23
PLM4_90_b1_sep16_scaffold_9526
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
1 3125 bp 50.30 13.49 85.34
PLM4_90_b1_sep16_scaffold_17366
Domain: Bacteria (66.67%)
3 3313 bp 45.10 13.49 67.91
PLM4_90_b1_sep16_scaffold_9581
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4147 bp 47.17 13.49 76.32
PLM4_90_b1_sep16_scaffold_14815
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
4 2501 bp 46.42 13.49 93.56
PLM4_90_b1_sep16_scaffold_12187
Species: BJP_IG2069_Desfulfarculales_53_13 (100%)
2 3380 bp 49.08 13.49 66.75
PLM4_90_b1_sep16_scaffold_67993
Class: Deltaproteobacteria (100%)
3 2842 bp 46.73 13.46 80.65
PLM4_90_b1_sep16_scaffold_12061
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
2 2778 bp 50.47 13.44 93.41
PLM4_90_b1_sep16_scaffold_10505
Domain: Bacteria (75%)
4 2980 bp 51.61 13.44 100.67
PLM4_90_b1_sep16_scaffold_6299
Class: Deltaproteobacteria (60%)
5 3842 bp 45.55 13.43 71.99
PLM4_90_b1_sep16_scaffold_13439
Class: Deltaproteobacteria (80%)
5 3611 bp 46.50 13.42 88.31
PLM4_90_b1_sep16_scaffold_12737
Species: RBG_13_Deltaproteobacteria_53_10_curated (66.67%)
3 2707 bp 49.65 13.41 72.37
PLM4_90_b1_sep16_scaffold_23088
Species: RBG_16_Deltaproteobacteria_47_11_curated (83.33%)
6 3627 bp 48.55 13.36 68.32
PLM4_90_b1_sep16_scaffold_16982
Domain: Bacteria (100%)
4 3690 bp 50.00 13.33 94.47
PLM4_90_b1_sep16_scaffold_29807
Species: RBG_13_Deltaproteobacteria_53_10_curated (100%)
1 2702 bp 53.48 13.32 78.28
PLM4_90_b1_sep16_scaffold_41609
Species: RBG_16_Deltaproteobacteria_48_10_curated (60%)
5 3160 bp 48.07 13.29 95.51
PLM4_90_b1_sep16_scaffold_20127
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
9 4483 bp 46.80 13.28 89.14
PLM4_90_b1_sep16_scaffold_11522
Class: Deltaproteobacteria (66.67%)
6 4652 bp 47.87 13.28 79.45
PLM4_90_b1_sep16_scaffold_3538
Species: RBG_16_Deltaproteobacteria_47_11_curated (62.5%)
8 7031 bp 48.53 13.27 84.91
PLM4_90_b1_sep16_scaffold_11121
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
3 2895 bp 52.09 13.26 68.91
PLM4_90_b1_sep16_scaffold_11142
Class: Deltaproteobacteria (57.14%)
7 5508 bp 47.60 13.24 77.02
PLM4_90_b1_sep16_scaffold_16379
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (66.67%)
6 4744 bp 47.51 13.22 83.85
PLM4_90_b1_sep16_scaffold_6016
Class: Deltaproteobacteria (100%)
6 3931 bp 50.09 13.20 83.26
PLM4_90_b1_sep16_scaffold_5896
Class: Deltaproteobacteria (60%)
5 3972 bp 45.87 13.18 83.84
PLM4_90_b1_sep16_scaffold_3020
Species: RBG_16_Deltaproteobacteria_47_11_curated (66.67%)
6 5901 bp 47.86 13.14 89.07
PLM4_90_b1_sep16_scaffold_27288
Class: Deltaproteobacteria (100%)
4 3711 bp 44.06 13.14 75.26
PLM4_90_b1_sep16_scaffold_7311
Species: RBG_16_Deltaproteobacteria_47_11_curated (50%)
8 5597 bp 46.36 13.11 75.74
PLM4_90_b1_sep16_scaffold_8996
Class: Deltaproteobacteria (100%)
3 3217 bp 47.44 13.10 93.44
PLM4_90_b1_sep16_scaffold_2827
Class: Deltaproteobacteria (66.67%)
9 7870 bp 50.10 13.09 79.25
PLM4_90_b1_sep16_scaffold_5081
Species: RBG_16_Deltaproteobacteria_49_23_curated (57.14%)
7 6394 bp 48.86 13.09 74.98
PLM4_90_b1_sep16_scaffold_4048
Species: RBG_16_Deltaproteobacteria_48_10_curated (66.67%)
9 8912 bp 48.51 13.08 88.43
PLM4_90_b1_sep16_scaffold_4456
Species: RBG_16_Deltaproteobacteria_47_11_curated (100%)
5 4551 bp 47.53 13.05 78.11
PLM4_90_b1_sep16_scaffold_23711
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
4 2679 bp 46.02 13.05 94.96
PLM4_90_b1_sep16_scaffold_5681
Species: RBG_13_Deltaproteobacteria_53_10_curated (60%)
5 5266 bp 52.64 13.05 86.19
PLM4_90_b1_sep16_scaffold_33563
Domain: Bacteria (60%)
5 3692 bp 43.77 13.04 62.32
PLM4_90_b1_sep16_scaffold_8939
Class: Deltaproteobacteria (57.14%)
7 5508 bp 49.35 13.04 79.03
PLM4_90_b1_sep16_scaffold_10248
Class: Deltaproteobacteria (50%)
6 3559 bp 44.56 13.02 84.07
PLM4_90_b1_sep16_scaffold_3307
Class: Deltaproteobacteria (75%)
8 8254 bp 49.65 13.01 81.56
PLM4_90_b1_sep16_scaffold_922
Class: Deltaproteobacteria (100%)
10 9058 bp 46.62 13.00 73.20
PLM4_90_b1_sep16_scaffold_24994
Class: Deltaproteobacteria (66.67%)
6 2759 bp 44.51 12.99 78.40
PLM4_90_b1_sep16_scaffold_1788
Species: RBG_16_Deltaproteobacteria_47_11_curated (81.25%)
16 11017 bp 46.55 12.99 90.98
PLM4_90_b1_sep16_scaffold_10184
Class: Deltaproteobacteria (83.33%)
6 3028 bp 52.15 12.98 64.00
PLM4_90_b1_sep16_scaffold_10876
Class: Deltaproteobacteria (66.67%)
6 2927 bp 46.02 12.97 69.90
PLM4_90_b1_sep16_scaffold_13623
Species: RBG_16_Deltaproteobacteria_47_11_curated (80%)
5 4916 bp 47.58 12.94 94.47
Displaying items 351-400 of 889 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.