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GCF_000373245_22

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GCF_000373245_22_1
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3..671)
DNA (669bp) protein (223aa)
hypothetical protein, partial n=1 Tax=Echinicola pacifica RepID=UPI0003660AB7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA76472.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_22_2
unknown

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comp(677..1105)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000364C37D
GCF_000373245_22_3
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(2262..2606)
DNA (345bp) protein (115aa)
50S ribosomal protein L20 n=1 Tax=Echinicola pacifica RepID=UPI000362FD9D
50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_22_4
Nitritalea halalkaliphila, Nitritalea, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(2700..2894)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Echinicola pacifica RepID=UPI0003615F97
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1189621 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Nitritalea.;" source="Nitritalea halalkaliphila LW7.;"
50S ribosomal protein L35
GCF_000373245_22_5
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2917..3468)
DNA (552bp) protein (184aa)
translation initiation factor IF-3 n=1 Tax=Echinicola pacifica RepID=UPI00037B09B8
translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_22_6
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3559..5508)
DNA (1950bp) protein (650aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
threonyl-tRNA synthetase n=1 Tax=Echinicola pacifica RepID=UPI0003825C38
threonyl-tRNA synthetase
GCF_000373245_22_7
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6320..6568
DNA (249bp) protein (83aa)
Rho termination factor n=1 Tax=Echinicola pacifica RepID=UPI000361E4CA
Rho termination factor {ECO:0000313|EMBL:EIJ39274.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
Rho termination factor
GCF_000373245_22_8
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6615..6821
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00036EECE4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA79672.1}; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_22_9
Draconibacterium sp. JN14CK-3, Draconibacterium, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6896..8137)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037699BC
Uncharacterized protein {ECO:0000313|EMBL:KJF44515.1}; TaxID=1544798 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prolixibacteraceae; Draconibacterium.;" source="Draconibacterium sp. JN14CK-3.;"
hypothetical protein
GCF_000373245_22_10
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8362..9144)
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000379708D
Putative large, multifunctional secreted protein {ECO:0000313|EMBL:EON78647.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
hypothetical protein
GCF_000373245_22_11
Echinicola vietnamensis, Echinicola, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9477..11066)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037868CA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA79834.1}; Flags: Precursor;; TaxID=926556 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Echinicola.;" source="Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221).;"
GCF_000373245_22_12
Prevotella sp. CAG:5226, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11368..12048)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003653D2D
Sel1 protein {ECO:0000313|EMBL:CDA46012.1}; TaxID=1262930 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:5226.;"
hypothetical protein
GCF_000373245_22_13
unknown

Not on your lists

comp(12237..12377)
DNA (141bp) protein (47aa)

This feature has no annotations

GCF_000373245_22_14
Cellulophaga geojensis, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12463..12840)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037BD55F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EWH12757.1}; TaxID=1328323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga geojensis KL-A.;"
GCF_000373245_22_15
GWF1_OD1_36_47, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(13061..13534)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ05920.1}; TaxID=1618769 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWF1_36_47.;"
GCF_000373245_22_16
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13888..15348
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00036FD51A
Glycosidase {ECO:0000313|EMBL:KIA86245.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
PH1107-like glycosidase
GCF_000373245_22_17
RBG_19FT_COMBO_Bacteroidetes_42_10_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15337..16365)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000373F7F6
hypothetical protein
Tax=RBG_19FT_COMBO_Bacteroidetes_42_10_curated
GCF_000373245_22_18

Not on your lists

comp(16362..18638)
DNA (2277bp) protein (759aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037D701A
Uncharacterized protein {ECO:0000313|EMBL:KKN48545.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
glycosyl transferase
GCF_000373245_22_19
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18983..21055)
DNA (2073bp) protein (691aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000370A67E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA58342.1}; TaxID=323261 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848).;"
GCF_000373245_22_20
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21129..23573)
DNA (2445bp) protein (815aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00035CC707
Uncharacterized protein {ECO:0000313|EMBL:KIC95482.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
GCF_000373245_22_21
unknown

Not on your lists

comp(23602..24504)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037217A1
GCF_000373245_22_22
Galbibacter marinus, Galbibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

25133..25897
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000368F9C6
Beta-lactamase {ECO:0000313|EMBL:EKF53961.1}; TaxID=555500 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Galbibacter.;" source="Galbibacter marinus.;"
Zn-dependent hydrolase
GCF_000373245_22_23
Verrucomicrobiae bacterium DG1235, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(25977..26834)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037D57AB
Transcriptional regulator, AraC family protein {ECO:0000313|EMBL:EDY83866.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
AraC family transcriptional regulator
GCF_000373245_22_24
Cyclobacterium qasimii, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27075..27728
DNA (654bp) protein (218aa)
Oxygen-insensitive NAD(P)H nitroreductase {ECO:0000313|EMBL:EPR68307.1}; EC=1.-.-.- {ECO:0000313|EMBL:EPR68307.1};; EC=1.5.1.34 {ECO:0000313|EMBL:EPR68307.1};; TaxID=641524 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium qasimii M12-11B.;"
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003820482
nitroreductase
GCF_000373245_22_25
Lentisphaera araneosa, Lentisphaera, Lentisphaerales, Lentisphaeria, Lentisphaerae, Bacteria

Not on your lists

28108..29673
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00037420C6
Uncharacterized protein {ECO:0000313|EMBL:EDM26765.1}; TaxID=313628 species="Bacteria; Lentisphaerae; Lentisphaeria; Lentisphaerales; Lentisphaeraceae; Lentisphaera.;" source="Lentisphaera araneosa HTCC2155.;"
hypothetical protein
GCF_000373245_22_26
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29862..31058)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003694280
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ24576.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
GCF_000373245_22_27
unknown

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comp(31454..31750)
DNA (297bp) protein (99aa)

This feature has no annotations

GCF_000373245_22_28
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

31843..32382
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI00036D4678
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:AHM59364.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
sigma-70 family RNA polymerase sigma factor
GCF_000373245_22_29
Leeuwenhoekiella blandensis, Leeuwenhoekiella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

32386..33126
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI000380E829
Uncharacterized protein {ECO:0000313|EMBL:EAQ50034.1}; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
GCF_000373245_22_30
unknown

Not on your lists

33139..33498
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003737BFB
Displaying items 1-30 of 160 in total

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