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SCNpilot_expt_500_bf_scaffold_321

Search features with annotation key words

Displaying items 1-30 of 54 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_321_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..422)
DNA (420bp) protein (140aa)
Transfer origin protein, TraL n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WSY1_VEREI
Conjugal transfer protein TraL {ECO:0000313|EMBL:KGG84787.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
transfer origin protein, TraL
SCNpilot_expt_500_bf_scaffold_321_2
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(435..830)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WSY2_VEREI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM60739.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_expt_500_bf_scaffold_321_3
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1271..1618
DNA (348bp) protein (116aa)
Uncharacterized protein {ECO:0000313|EMBL:KGG84788.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_expt_500_bf_scaffold_321_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1615..3519
DNA (1905bp) protein (635aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GUQ0_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:KGG84790.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
type IV secretory pathway VirD2 pilin (relaxase)-like protein
SCNpilot_expt_500_bf_scaffold_321_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3524..4132
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121G6_POLSJ
Uncharacterized protein {ECO:0000313|EMBL:KGG84791.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_321_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4269..6113
DNA (1845bp) protein (615aa)
Uncharacterized protein n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XEP9_METSD
Uncharacterized protein {ECO:0000313|EMBL:KGG84792.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_321_7
Halothiobacillus neapolitanus, Halothiobacillus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6114..8420
DNA (2307bp) protein (769aa)
TRAG family protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L1A2_HALNC
TRAG family protein; K03205 type IV secretion system protein VirD4
TRAG family protein {ECO:0000313|EMBL:ACX96475.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCNpilot_expt_500_bf_scaffold_321_8
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8413..8841
DNA (429bp) protein (143aa)
Single-stranded DNA-binding protein n=1 Tax=Glaciecola agarilytica NO2 RepID=K6X088_9ALTE
single-strand binding protein; K03111 single-strand DNA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_500_bf_scaffold_321_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8844..9398
DNA (555bp) protein (185aa)
Conjugal transfer peptidase TraF n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0W8V1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGG84400.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
TraF protein of DNA transfer system
SCNpilot_expt_500_bf_scaffold_321_10

Not on your lists

9379..11532
DNA (2154bp) protein (718aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
DNA topoisomerase III (EC:5.99.1.2); K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=uncultured bacterium RepID=J9Z6S1_9BACT rbh
SCNpilot_expt_500_bf_scaffold_321_11
unknown

Not on your lists

11535..11828
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_321_12
Laribacter hongkongensis, Laribacter, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11825..12325
DNA (501bp) protein (167aa)
Putative exported nuclease n=1 Tax=Laribacter hongkongensis (strain HLHK9) RepID=C1D7G7_LARHH
exported nuclease
Putative exported nuclease {ECO:0000313|EMBL:ACO74407.1}; TaxID=557598 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Laribacter.;" source="Laribacter hongkongensis (strain HLHK9).;"
SCNpilot_expt_500_bf_scaffold_321_13
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12322..13491
DNA (1170bp) protein (390aa)
TraB n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF77_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KGG84402.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
conjugal transfer protein TraB
SCNpilot_expt_500_bf_scaffold_321_14
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13502..14056
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZMA2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KGG84405.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
lytic transglycosylase; K03194 type IV secretion system protein VirB1
SCNpilot_expt_500_bf_scaffold_321_15
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14703..15344
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=S9ZLG6_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EPZ14342.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_321_16
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15354..15569
DNA (216bp) protein (72aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035FFE3B
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIF28115.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
SCNpilot_expt_500_bf_scaffold_321_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15573..15770
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T038_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:GAO20209.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_500_bf_scaffold_321_18
unknown

Not on your lists

15907..16194
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003B62E6C
SCNpilot_expt_500_bf_scaffold_321_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16221..16619
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:KGG84414.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_expt_500_bf_scaffold_321_20
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16624..16860
DNA (237bp) protein (79aa)
Uncharacterized protein {ECO:0000313|EMBL:KGG84415.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_expt_500_bf_scaffold_321_21

Not on your lists

16917..17279
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00035D5703
Uncharacterized protein {ECO:0000313|EMBL:CAC79150.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_321_22
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17357..18235
DNA (879bp) protein (293aa)
TrfA family protein n=2 Tax=Enterobacteriaceae RepID=M3V7Y7_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:KGG84417.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
TrfA2
SCNpilot_expt_500_bf_scaffold_321_23
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18281..19222
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Thauera terpenica 58Eu RepID=T0AP63_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KGG84418.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
OmpA/MotB domain-containing protein
SCNpilot_expt_500_bf_scaffold_321_24
unknown

Not on your lists

19230..19562
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_321_25
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19559..19981
DNA (423bp) protein (141aa)
Signal transduction protein n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CWN5_9BURK
Signal transduction protein {ECO:0000313|EMBL:EIJ48028.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. GW103.;"
signal transduction protein
SCNpilot_expt_500_bf_scaffold_321_26
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19996..20574
DNA (579bp) protein (193aa)
Uncharacterized protein {ECO:0000313|EMBL:KGG84419.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_expt_500_bf_scaffold_321_27
unknown

Not on your lists

20571..20768
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_321_28
unknown

Not on your lists

20765..21052
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_321_29
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21129..22058
DNA (930bp) protein (310aa)
Putative uncharacterized protein n=1 Tax=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) RepID=D0L199_HALNC
Uncharacterized protein {ECO:0000313|EMBL:KGG84420.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_321_30
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22093..22446
DNA (354bp) protein (118aa)
Putative membrane protein n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XMR5_9XANT
Putative membrane protein {ECO:0000313|EMBL:CCF70495.1}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. punicae str. LMG 859.;"
hypothetical protein
Displaying items 1-30 of 54 in total

View Taxonomy