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SCNpilot_expt_500_bf_scaffold_693

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_693_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(185..490)
DNA (306bp) protein (102aa)
Addiction module toxin, RelE/StbE family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDM5_ACISJ
addiction module antitoxin
Addiction module toxin, RelE/StbE family {ECO:0000313|EMBL:ABM44350.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

738..1694
DNA (957bp) protein (319aa)
DNA-cytosine methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Cytosine-specific methyltransferase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDM7_ACISJ rbh
SCNpilot_expt_500_bf_scaffold_693_3
unknown

Not on your lists

comp(2739..2873)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_693_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2949..3182)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN0_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44355.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3351..3881)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN1_ACISJ rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM44356.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_6
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3960..4634)
DNA (675bp) protein (225aa)
Phage DNA methylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN2_ACISJ rbh
phage DNA methylase rbh
Phage DNA methylase {ECO:0000313|EMBL:ABM44357.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4790..5221)
DNA (432bp) protein (144aa)
Uncharacterized protein n=15 Tax=Bacteria RepID=A1WDN3_ACISJ
hypothetical protein
Upf30.5 protein {ECO:0000313|EMBL:AJM90418.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
SCNpilot_expt_500_bf_scaffold_693_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5237..5935)
DNA (699bp) protein (233aa)
TraX family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN4_ACISJ rbh
conjugal transfer protein TrbP rbh
TraX family protein {ECO:0000313|EMBL:ABM44359.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5935..6201)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN5_ACISJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM44360.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6230..6865)
DNA (636bp) protein (212aa)
Lytic transglycosylase, catalytic n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN6_ACISJ rbh
conjugal transfer protein TrbN rbh
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:ABM44361.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6879..7463)
DNA (585bp) protein (195aa)
TrbM family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN7_ACISJ rbh
conjugal transfer protein TrbM rbh
TrbM family protein {ECO:0000313|EMBL:ABM44362.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_12
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7480..9213)
DNA (1734bp) protein (578aa)
TrbL/VirB6 plasmid conjugal transfer protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN8_ACISJ rbh
TrbL/VirB6 plasmid conjugal transfer protein; K03201 type IV secretion system protein VirB6 rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:ABM44363.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9224..9451)
DNA (228bp) protein (76aa)
Entry exclusion protein TrbK n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDN9_ACISJ
entry exclusion protein TrbK
Entry exclusion protein TrbK {ECO:0000313|EMBL:ABM44364.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9461..10225)
DNA (765bp) protein (255aa)
TrbJ protein of DNA transfer system n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP0_ACISJ rbh
conjugal transfer protein TrbJ rbh
TrbJ protein of DNA transfer system {ECO:0000313|EMBL:ABM44365.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10243..11661)
DNA (1419bp) protein (473aa)
Conjugation TrbI family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP1_ACISJ rbh
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10 rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:ABM44366.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11666..12154)
DNA (489bp) protein (163aa)
Conjugal transfer TrbH family protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP2_ACISJ rbh
conjugal transfer protein TrbH rbh
Conjugal transfer TrbH family protein {ECO:0000313|EMBL:ABM44367.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_17

Not on your lists

comp(12157..13056)
DNA (900bp) protein (300aa)
Conjugal transfer protein TrbG/VirB9/CagX n=2 Tax=Bacteria RepID=A1WDP3_ACISJ rbh
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9 rbh
TrbG {ECO:0000313|EMBL:AEV56648.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_693_18
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13074..13856)
DNA (783bp) protein (261aa)
Conjugal transfer protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP4_ACISJ rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein {ECO:0000313|EMBL:ABM44369.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13853..16411)
DNA (2559bp) protein (853aa)
Type IV secretion/conjugal transfer ATPase, VirB4 family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP5_ACISJ rbh
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4 rbh
Type IV secretion/conjugal transfer ATPase, VirB4 family {ECO:0000313|EMBL:ABM44370.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_20
Mycobacterium abscessus, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16408..16719)
DNA (312bp) protein (104aa)
Conjugal transfer TrbD family protein n=19 Tax=Bacteria RepID=A1WDP6_ACISJ
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
TrbD {ECO:0000313|EMBL:AFJ38119.1}; TaxID=1168066 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium abscessus.;" source="Mycobacterium abscessus subsp. bolletii F1725.;"
SCNpilot_expt_500_bf_scaffold_693_21

Not on your lists

comp(16723..17187)
DNA (465bp) protein (155aa)
Conjugal transfer protein TrbC n=2 Tax=Bacteria RepID=A1WDP7_ACISJ rbh
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2 rbh
Conjugative transfer protein {ECO:0000313|EMBL:AFV47182.1}; TrbC conjugal transfer protein {ECO:0000313|EMBL:CAG26000.1}; Flags: Precursor;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_693_22
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17200..18165)
DNA (966bp) protein (322aa)
Type II secretion system protein E n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WDP8_ACISJ rbh
conjugal transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
Type II secretion system protein E {ECO:0000313|EMBL:ABM44373.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_500_bf_scaffold_693_23

Not on your lists

comp(18476..18838)
DNA (363bp) protein (121aa)
Helix-turn-helix domain protein n=3 Tax=Bacteria RepID=A1WDP9_ACISJ
conjugal transfer protein TrbA
TrbA {ECO:0000313|EMBL:AEV56642.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_693_24

Not on your lists

18947..19285
DNA (339bp) protein (113aa)
Single-stranded DNA-binding protein n=2 Tax=Bacteria RepID=A1WDQ0_ACISJ
single-strand binding protein; K03111 single-strand DNA-binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_693_25

Not on your lists

19333..20556
DNA (1224bp) protein (408aa)
Replication initiation protein n=1 Tax=uncultured bacterium RepID=J9RT84_9BACT rbh
Replication initiation protein {ECO:0000313|EMBL:AFR43728.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TrfA family protein rbh
SCNpilot_expt_500_bf_scaffold_693_26
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20747..21091)
DNA (345bp) protein (115aa)
Transposase Tn1721 n=1 Tax=Pseudomonas aeruginosa DHS01 RepID=V4ZB66_PSEAI
transposase
Transposase for transposon Tn501 {ECO:0000313|EMBL:ETU73452.1}; TaxID=1402581 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa PS42.;"
SCNpilot_expt_500_bf_scaffold_693_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21165..21926)
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WY99_DELAC rbh
Uncharacterized protein {ECO:0000313|EMBL:EPD42975.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
IstB domain-containing protein ATP-binding protein rbh
SCNpilot_expt_500_bf_scaffold_693_28
Alcaligenes sp. O-1, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21916..23400)
DNA (1485bp) protein (495aa)
IstA n=1 Tax=Alcaligenes sp. O-1 RepID=Q3LFL2_9BURK rbh
IstA {ECO:0000313|EMBL:ABA54725.1}; TaxID=108557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes sp. O-1.;"
integrase catalytic subunit rbh
Displaying 28 items

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