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scnpilot_solids1_trim150_scaffold_265

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Displaying items 1-30 of 96 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_265_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..100
DNA (99bp) protein (33aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
succinyl-CoA synthetase (ADP-forming) alpha subunit (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAP3_9GAMM
scnpilot_solids1_trim150_scaffold_265_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190..1485
DNA (1296bp) protein (432aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; EC=2.6.1.62 {ECO:0000256|HAMAP-Rule:MF_00834};; 7,8-diamino-pelargonic acid aminotransferase {ECO:0000256|HAMAP-Rule:MF_00834}; 7,8-diaminononanoate synthase {ECO:0000256|HAMAP-Rule:MF_00834}; Diaminopelargonic acid synthase {ECO:0000256|HAMAP-Rule:MF_00834}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
bioA; putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9V2_9GAMM rbh
scnpilot_solids1_trim150_scaffold_265_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1545..3179
DNA (1635bp) protein (545aa)
NAD synthetase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI7_9GAMM
NAD+ synthetase
NAD+ synthetase {ECO:0000313|EMBL:AGG87867.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3240..4073)
DNA (834bp) protein (278aa)
Outer membrane protein assembly factor BamD n=1 Tax=Rhodanobacter denitrificans RepID=M4NEC8_9GAMM rbh
Beta-barrel assembly machine subunit BamD rbh
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4179..5153
DNA (975bp) protein (325aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NBA3_9GAMM rbh
scnpilot_solids1_trim150_scaffold_265_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5189..5995
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI4_9GAMM rbh
uncharacterized protein, YfiH family rbh
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6122..8713
DNA (2592bp) protein (864aa)
ATP-dependent chaperone ClpB n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI3_9GAMM rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
ATP-dependent chaperone ClpB rbh
scnpilot_solids1_trim150_scaffold_265_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8807..9538)
DNA (732bp) protein (244aa)
Uncharacterized protein involved in formation of curli polymers n=1 Tax=Rhodanobacter denitrificans RepID=M4NDC8_9GAMM rbh
uncharacterized protein involved in formation of curli polymers rbh
Uncharacterized protein involved in formation of curli polymers {ECO:0000313|EMBL:AGG87872.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9947..12319)
DNA (2373bp) protein (791aa)
TonB-dependent outer membrane receptor n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI2_9GAMM rbh
outer membrane receptor for ferrienterochelin and colicins rbh
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:AGG87873.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12609..12923
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZI1_9GAMM
putative regulatory protein, FmdB family
Putative regulatory protein, FmdB family {ECO:0000313|EMBL:AGG87874.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13026..13658
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGT0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL98671.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF3011) rbh
scnpilot_solids1_trim150_scaffold_265_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13748..15520
DNA (1773bp) protein (591aa)
Aspartate--tRNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ97_9GAMM rbh
aspartyl-tRNA synthetase rbh
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:AGG87876.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15561..16196
DNA (636bp) protein (212aa)
Lysophospholipase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH8_9GAMM rbh
lysophospholipase rbh
Lysophospholipase {ECO:0000313|EMBL:AGG87877.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16295..17029
DNA (735bp) protein (245aa)
Probable transcriptional regulatory protein UUA_11091 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGT3_9GAMM rbh
Probable transcriptional regulatory protein UUA_11091 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-binding regulatory protein, YebC/PmpR family rbh
scnpilot_solids1_trim150_scaffold_265_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17063..17584
DNA (522bp) protein (174aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Holliday junction endonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGT4_9GAMM rbh
scnpilot_solids1_trim150_scaffold_265_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17622..18218
DNA (597bp) protein (199aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH5_9GAMM rbh
Holliday junction DNA helicase subunit RuvA rbh
scnpilot_solids1_trim150_scaffold_265_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18236..20122
DNA (1887bp) protein (629aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH4_9GAMM rbh
K+ transporter rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20241..21290
DNA (1050bp) protein (350aa)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH3_9GAMM rbh
Holliday junction DNA helicase subunit RuvB rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_265_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21283..21711
DNA (429bp) protein (143aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH2_9GAMM
tol-pal system-associated acyl-CoA thioesterase
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:AGG87883.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21730..22416
DNA (687bp) protein (229aa)
Cell division and transport-associated protein TolQ n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH1_9GAMM rbh
Cell division and transport-associated protein TolQ rbh
Cell division and transport-associated protein TolQ {ECO:0000313|EMBL:AGG87884.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22430..22894
DNA (465bp) protein (155aa)
TolR protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH0_9GAMM
Cell division and transport-associated protein TolR
Cell division and transport-associated protein TolR {ECO:0000313|EMBL:AGG87885.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22881..23825
DNA (945bp) protein (315aa)
F0F1-type ATP synthase, beta subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NJA7_9GAMM rbh
F0F1-type ATP synthase, beta subunit rbh
F0F1-type ATP synthase, beta subunit {ECO:0000313|EMBL:AGG87886.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23822..25153
DNA (1332bp) protein (444aa)
Protein TolB n=2 Tax=Rhodanobacter denitrificans RepID=M4NDE0_9GAMM rbh
tol-pal system beta propeller repeat protein TolB rbh
Protein TolB {ECO:0000256|HAMAP-Rule:MF_00671}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25406..25849
DNA (444bp) protein (148aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Rhodanobacter denitrificans RepID=I4WZG7_9GAMM
peptidoglycan-associated lipoprotein
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:AGG87888.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_265_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25849..26718
DNA (870bp) protein (290aa)
Tol-pal system protein YbgF n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU4_9GAMM rbh
Tol-pal system protein YbgF {ECO:0000313|EMBL:EIL98685.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tol-pal system protein YbgF rbh
scnpilot_solids1_trim150_scaffold_265_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26730..27422
DNA (693bp) protein (231aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZG5_9GAMM rbh
organic radical activating enzyme rbh
scnpilot_solids1_trim150_scaffold_265_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27581..28267
DNA (687bp) protein (229aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
7-cyano-7-deazaguanine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NJB2_9GAMM rbh
queuosine biosynthesis protein QueC rbh
scnpilot_solids1_trim150_scaffold_265_trna_1
unknown

Not on your lists

28337..28409
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_265_28
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28610..29899
DNA (1290bp) protein (430aa)
Integrase family protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8T6X9_9GAMM
Integrase family protein {ECO:0000313|EMBL:EIT69458.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
integrase family protein
scnpilot_solids1_trim150_scaffold_265_29
unknown

Not on your lists

comp(29882..30103)
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying items 1-30 of 96 in total

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