ggKbase home page
This organism can only be binned in the context of its binning project GWA1. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

scnpilot_solids1_trim150_scaffold_108

Search features with annotation key words

Displaying items 1-30 of 98 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_108_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..282)
DNA (282bp) protein (94aa)
Integrase catalytic subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W579_9SPHN
Integrase catalytic subunit {ECO:0000313|EMBL:ENY82672.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
integrase catalytic subunit
scnpilot_solids1_trim150_scaffold_108_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318..596)
DNA (279bp) protein (93aa)
Transposase IS3/IS911 family protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGV0_9SPHN
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ENY82671.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
scnpilot_solids1_trim150_scaffold_108_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

704..1846
DNA (1143bp) protein (381aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SMR2_9RHOB rbh
Flagellar biosynthesis protein FliA {ECO:0000313|EMBL:AKH18669.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_108_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1871..2518
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C14F rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH18670.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_108_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2515..2730
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KNU8_METEX
Uncharacterized protein {ECO:0000313|EMBL:AKH18671.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2727..3359
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIN9_BREDI rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH18672.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3400..4302)
DNA (903bp) protein (301aa)
Mobile element protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MP08_9SPHN
Mobile element protein {ECO:0000313|EMBL:CCW17372.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
integrase rbh
scnpilot_solids1_trim150_scaffold_108_8
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4302..4628)
DNA (327bp) protein (109aa)
Mobile element protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MPJ2_9SPHN
Mobile element protein {ECO:0000313|EMBL:CCW17373.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
transposase IS3 family protein
scnpilot_solids1_trim150_scaffold_108_9
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4732..5394)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM21_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW16538.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
XRE family transcriptional regulator
scnpilot_solids1_trim150_scaffold_108_10
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5451..6254
DNA (804bp) protein (268aa)
disulfide bond isomerase DsbC/G; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1] rbh
Protein-disulfide isomerase n=2 Tax=Sphingomonadaceae RepID=T0G387_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA09629.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_solids1_trim150_scaffold_108_11
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6439..6753
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IP90_9SPHN
Putative secreted protein {ECO:0000313|EMBL:AJA09630.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_12
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6889..7155
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8X3_SPHJU
Conserved Putative membrane protein {ECO:0000313|EMBL:AJA09631.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_13
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7164..7799
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D3E4_SPHYA rbh
Putative sex pilus assembly and synthesis protein {ECO:0000313|EMBL:AJA09632.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
putative sex pilus assembly and synthesis protein; K12067 conjugal transfer pilus assembly protein TraE rbh
scnpilot_solids1_trim150_scaffold_108_14
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7783..8547
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IM52_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA09633.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_108_15
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8544..9845
DNA (1302bp) protein (434aa)
Conjugal transfer protein TraB n=2 Tax=Sphingomonadaceae RepID=T0G382_9SPHN rbh
Conjugal transfer protein TraB {ECO:0000313|EMBL:AJA09634.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
conjugal transfer protein TraB; K12065 conjugal transfer pilus assembly protein TraB rbh
scnpilot_solids1_trim150_scaffold_108_16
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9847..10587
DNA (741bp) protein (247aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
DNA methylase N-4/N-6 domain-containing protein; K07319 putative adenine-specific DNA-methyltransferase [EC:2.1.1.72]
DNA methylase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HUC2_9SPHN rbh
scnpilot_solids1_trim150_scaffold_108_17
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10912..11520
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM31_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA09635.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
Type IV conjugative transfer system protein TraV; K12064 conjugal transfer pilus assembly protein TraV
scnpilot_solids1_trim150_scaffold_108_18
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11517..14051
DNA (2535bp) protein (845aa)
Type IV secretory pathway VirB4 component n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8X8_SPHJU rbh
Type IV secretory pathway VirB4 component {ECO:0000313|EMBL:AJA09636.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
traC; type IV secretory pathway VirB4 component; K12063 conjugal transfer ATP-binding protein TraC rbh
scnpilot_solids1_trim150_scaffold_108_19
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14048..14377
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8X9_SPHJU
Putative membrane protein {ECO:0000313|EMBL:AJA09637.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_20
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14374..14610
DNA (237bp) protein (79aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003644DDB
Uncharacterized protein {ECO:0000313|EMBL:AJA07203.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
scnpilot_solids1_trim150_scaffold_108_21
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14600..15250
DNA (651bp) protein (217aa)
Conjugal transfer protein TraW n=2 Tax=Sphingomonadaceae RepID=T0HKI3_9SPHN
Plasmid transfer protein TraW {ECO:0000313|EMBL:AJA09638.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
traW; plasmid transfer protein TraW; K12061 conjugal transfer pilus assembly protein TraW
scnpilot_solids1_trim150_scaffold_108_22
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15468..15932)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HGY2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB11358.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
Aha1 domain-containing protein
scnpilot_solids1_trim150_scaffold_108_23
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16325..17404
DNA (1080bp) protein (360aa)
UPI0003D650CB related cluster n=1 Tax=unknown RepID=UPI0003D650CB rbh
TraU family protein {ECO:0000313|EMBL:AJA09639.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TraU family protein; K12060 conjugal transfer pilus assembly protein TraU rbh
scnpilot_solids1_trim150_scaffold_108_24
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17747..19690
DNA (1944bp) protein (648aa)
Putative exported protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8Y4_SPHJU rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA09640.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_108_25
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19687..20802
DNA (1116bp) protein (372aa)
Mating pair stabilization protein TraN n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4Z8Y5_SPHJU rbh
Mating pair stabilization protein TraN {ECO:0000313|EMBL:AJA09641.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
traN; mating pair stabilization protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN rbh
scnpilot_solids1_trim150_scaffold_108_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20774..21667
DNA (894bp) protein (298aa)
Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D7G1_SPHYA rbh
Type-F conjugative transfer system pilin assembly protein TrbC {ECO:0000313|EMBL:AJA09642.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
type-F conjugative transfer system pilin assembly protein TrbC rbh
scnpilot_solids1_trim150_scaffold_108_27
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21639..22238
DNA (600bp) protein (200aa)
UPI0003D6888D related cluster n=1 Tax=unknown RepID=UPI0003D6888D
Type IV secretory protease {ECO:0000313|EMBL:AJA09643.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
type IV secretory protease
scnpilot_solids1_trim150_scaffold_108_28
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22238..23125
DNA (888bp) protein (296aa)
Thioredoxin-related protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ESV5_SPHCR rbh
Thioredoxin-like protein {ECO:0000313|EMBL:AJA09644.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
thioredoxin-like protein; K12057 conjugal transfer pilus assembly protein TraF rbh
scnpilot_solids1_trim150_scaffold_108_29
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23122..23706
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GTW1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA09646.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_108_30
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23718..24884)
DNA (1167bp) protein (389aa)
Putative ATPase (AAA+ superfamily) n=1 Tax=Phyllobacterium sp. YR531 RepID=J2V917_9RHIZ rbh
Putative ATPase (AAA+ superfamily) {ECO:0000313|EMBL:EJN02357.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein; K07133 rbh
Displaying items 1-30 of 98 in total

View Taxonomy