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F01_scaffold_78

Search features with annotation key words

Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
F01_scaffold_78_1
Odoribacter splanchnicus CAG:14, Odoribacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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548..1198
DNA (651bp) protein (217aa)
ABC-2 type transporter {ECO:0000313|EMBL:CDB06148.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Odoribacter; environmental samples.;" source="Odoribacter splanchnicus CAG:14.;"
F01_scaffold_78_trna_1
unknown

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1375..1448
DNA (74bp)
transferRNA Thr
F01_scaffold_78_trna_2
unknown

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1482..1564
DNA (83bp)
transferRNA Tyr
F01_scaffold_78_trna_3
unknown

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1601..1673
DNA (73bp)
transferRNA Gly
F01_scaffold_78_trna_4
unknown

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1707..1778
DNA (72bp)
transferRNA Thr
F01_scaffold_78_2
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1883..3067
DNA (1185bp) protein (395aa)
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_trna_5
unknown

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3173..3245
DNA (73bp)
transferRNA Trp
F01_scaffold_78_3
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3263..3463
DNA (201bp) protein (67aa)
Preprotein translocase SecE subunit {ECO:0000313|EMBL:CDE57357.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_4
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3496..4098
DNA (603bp) protein (201aa)
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_5
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


4291..4734
DNA (444bp) protein (148aa)
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_6
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


4750..5445
DNA (696bp) protein (232aa)
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_7
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


5468..5989
DNA (522bp) protein (174aa)
Ribosomal protein L10 {ECO:0000313|EMBL:CDE57361.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_8
Prevotella sp. CAG:1031, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


6030..6404
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:1031.;"
F01_scaffold_78_9
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6996..10811
DNA (3816bp) protein (1272aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_10
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10922..15289
DNA (4368bp) protein (1456aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_11
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15694..16242
DNA (549bp) protein (183aa)
N-acetylmuramoyl-L-alanine amidase (T3 lysozyme) {ECO:0000313|EMBL:CDE57364.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_12
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16239..16685
DNA (447bp) protein (149aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57365.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_13
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16768..17154
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57366.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_trna_6
unknown

Not on your lists

17306..17378
DNA (73bp)
transferRNA Pro
F01_scaffold_78_14
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(17782..19005)
DNA (1224bp) protein (408aa)
Probable cell surface protein (Leucine-rich repeat protein) {ECO:0000313|EMBL:CDE57742.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_15
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19104..20483)
DNA (1380bp) protein (460aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57367.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_16
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20792..23635)
DNA (2844bp) protein (948aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57369.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_17
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23736..25262)
DNA (1527bp) protein (509aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57370.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_18
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25259..26536)
DNA (1278bp) protein (426aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57371.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_19
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26611..29388)
DNA (2778bp) protein (926aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57373.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_20
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29583..30914)
DNA (1332bp) protein (444aa)
MATE efflux family protein {ECO:0000313|EMBL:CDE57374.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_21
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30951..32978)
DNA (2028bp) protein (676aa)
OPT family oligopeptide transporter {ECO:0000313|EMBL:CDE57375.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_22
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(33030..34748)
DNA (1719bp) protein (573aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57376.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_23
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(34819..35571)
DNA (753bp) protein (251aa)
Uncharacterized protein {ECO:0000313|EMBL:CDE57382.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
F01_scaffold_78_24
Prevotella sp. CAG:873, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(35568..36467)
DNA (900bp) protein (300aa)
ParB-like partition protein {ECO:0000313|EMBL:CDE57383.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:873.;"
Displaying items 1-30 of 51 in total

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