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FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 101-150 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_4826
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 2537 bp 61.84 17.62 94.95
FFSP_062018_mid_0_1um_scaffold_5118
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2422 bp 57.31 17.65 93.27
FFSP_062018_mid_0_1um_scaffold_7489
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1714 bp 59.68 17.68 99.94
FFSP_062018_mid_0_1um_scaffold_14405
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1001 bp 59.84 17.68 96.20
FFSP_062018_mid_0_1um_scaffold_3054
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 3863 bp 64.95 17.71 92.34
FFSP_062018_mid_0_1um_scaffold_13893
Species: Thiobacillus denitrificans (100%)
1 1029 bp 66.18 17.78 100.00
FFSP_062018_mid_0_1um_scaffold_5640
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2207 bp 61.98 17.81 95.42
FFSP_062018_mid_0_1um_scaffold_9428
Species: Thiobacillus denitrificans (100%)
1 1415 bp 63.53 17.81 99.86
FFSP_062018_mid_0_1um_scaffold_3172
Order: Hydrogenophilales (50%)
4 3746 bp 63.05 17.82 87.29
FFSP_062018_mid_0_1um_scaffold_8673
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1514 bp 62.09 17.83 99.87
FFSP_062018_mid_0_1um_scaffold_5051
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2450 bp 63.27 17.88 90.24
FFSP_062018_mid_0_1um_scaffold_5813
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 2146 bp 57.78 17.89 97.44
FFSP_062018_mid_0_1um_scaffold_3544
Order: Hydrogenophilales (60%)
5 3393 bp 66.37 17.90 94.52
FFSP_062018_mid_0_1um_scaffold_5870
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2129 bp 61.81 17.90 91.03
FFSP_062018_mid_0_1um_scaffold_3833
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 3165 bp 60.60 17.91 96.87
FFSP_062018_mid_0_1um_scaffold_2070
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (80%)
5 5440 bp 62.28 17.92 73.07
FFSP_062018_mid_0_1um_scaffold_8626
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1522 bp 58.15 17.94 100.13
FFSP_062018_mid_0_1um_scaffold_14079
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1018 bp 60.71 17.98 99.90
FFSP_062018_mid_0_1um_scaffold_4211
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2884 bp 63.66 18.00 91.44
FFSP_062018_mid_0_1um_scaffold_13025
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1083 bp 61.22 18.01 91.97
FFSP_062018_mid_0_1um_scaffold_4424
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2761 bp 63.42 18.04 98.33
FFSP_062018_mid_0_1um_scaffold_14212
Species: Thiobacillus denitrificans (50%)
2 1011 bp 64.19 18.10 98.52
FFSP_062018_mid_0_1um_scaffold_6787
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1871 bp 53.55 18.12 73.60
FFSP_062018_mid_0_1um_scaffold_4577
Order: Hydrogenophilales (50%)
6 2679 bp 58.34 18.14 89.36
FFSP_062018_mid_0_1um_scaffold_12117
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1147 bp 61.81 18.18 87.62
FFSP_062018_mid_0_1um_scaffold_5085
Order: Hydrogenophilales (66.67%)
6 2438 bp 59.06 18.21 89.34
FFSP_062018_mid_0_1um_scaffold_3482
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 3448 bp 60.93 18.23 96.32
FFSP_062018_mid_0_1um_scaffold_3894
Order: Hydrogenophilales (57.14%)
7 3124 bp 57.04 18.25 79.80
FFSP_062018_mid_0_1um_scaffold_9500
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1404 bp 63.82 18.27 93.38
FFSP_062018_mid_0_1um_scaffold_5441
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2276 bp 63.40 18.32 96.75
FFSP_062018_mid_0_1um_scaffold_8182
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1588 bp 59.38 18.32 100.69
FFSP_062018_mid_0_1um_scaffold_8965
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1473 bp 58.18 18.33 93.48
FFSP_062018_mid_0_1um_scaffold_6777
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 1873 bp 65.08 18.34 98.83
FFSP_062018_mid_0_1um_scaffold_6814
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1862 bp 63.43 18.37 95.38
FFSP_062018_mid_0_1um_scaffold_5442
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2276 bp 61.51 18.39 99.38
FFSP_062018_mid_0_1um_scaffold_13189
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (100%)
1 1072 bp 63.99 18.47 99.63
FFSP_062018_mid_0_1um_scaffold_12486
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1119 bp 61.93 18.50 100.00
FFSP_062018_mid_0_1um_scaffold_10020
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1344 bp 61.46 18.53 81.03
FFSP_062018_mid_0_1um_scaffold_14368
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1003 bp 59.22 18.54 99.60
FFSP_062018_mid_0_1um_scaffold_8983
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1471 bp 53.03 18.56 94.43
FFSP_062018_mid_0_1um_scaffold_4301
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2828 bp 62.73 18.56 99.93
FFSP_062018_mid_0_1um_scaffold_4879
Order: Hydrogenophilales (100%)
3 2516 bp 61.76 18.60 90.26
FFSP_062018_mid_0_1um_scaffold_13423
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1056 bp 62.31 18.61 78.69
FFSP_062018_mid_0_1um_scaffold_13458
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1054 bp 65.56 18.64 100.19
FFSP_062018_mid_0_1um_scaffold_6337
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1987 bp 56.57 18.65 53.90
FFSP_062018_mid_0_1um_scaffold_5400
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 2291 bp 67.26 18.66 91.66
FFSP_062018_mid_0_1um_scaffold_13529
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1050 bp 56.00 18.71 46.57
FFSP_062018_mid_0_1um_scaffold_2147
Order: Hydrogenophilales (100%)
5 5243 bp 62.33 18.71 93.38
FFSP_062018_mid_0_1um_scaffold_9719
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1377 bp 62.02 18.74 95.21
FFSP_062018_mid_0_1um_scaffold_8427
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1552 bp 67.01 18.75 100.32
Displaying items 101-150 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.