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FFSP_062018_mid_0_1um_Hydrogenophilales_62_23

FFSP_062018_mid_0_1um_RIFOXYD1_FULL_Hydrogenophilales_62_11_curated_62_23
In projects: FFSP_062018_mid_0_1um  |  SOB_across_mines

Consensus taxonomy: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated  →  Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Description

(J)

Displaying items 151-200 of 800 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
FFSP_062018_mid_0_1um_scaffold_5432
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
6 2279 bp 61.52 18.76 96.88
FFSP_062018_mid_0_1um_scaffold_7900
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1637 bp 60.90 18.78 100.06
FFSP_062018_mid_0_1um_scaffold_4239
Order: Hydrogenophilales (66.67%)
3 2868 bp 58.02 18.78 75.10
FFSP_062018_mid_0_1um_scaffold_6406
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 1966 bp 64.80 18.85 99.19
FFSP_062018_mid_0_1um_scaffold_2385
Order: Hydrogenophilales (57.14%)
7 4814 bp 64.33 18.88 90.67
FFSP_062018_mid_0_1um_scaffold_6217
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 2017 bp 61.97 18.89 94.30
FFSP_062018_mid_0_1um_scaffold_7036
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1807 bp 62.15 18.93 95.96
FFSP_062018_mid_0_1um_scaffold_10301
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1314 bp 59.74 18.95 98.63
FFSP_062018_mid_0_1um_scaffold_6470
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1947 bp 60.66 18.95 88.91
FFSP_062018_mid_0_1um_scaffold_12737
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1102 bp 67.88 19.06 99.91
FFSP_062018_mid_0_1um_scaffold_8596
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 1526 bp 61.27 19.07 88.66
FFSP_062018_mid_0_1um_scaffold_9364
Order: Hydrogenophilales (50%)
4 1423 bp 55.80 19.08 62.68
FFSP_062018_mid_0_1um_scaffold_8189
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 1587 bp 66.10 19.09 91.12
FFSP_062018_mid_0_1um_scaffold_2174
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
8 5205 bp 59.92 19.11 99.19
FFSP_062018_mid_0_1um_scaffold_7500
Order: Hydrogenophilales (66.67%)
3 1710 bp 59.65 19.12 97.54
FFSP_062018_mid_0_1um_scaffold_2252
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (62.5%)
8 5041 bp 56.34 19.16 97.00
FFSP_062018_mid_0_1um_scaffold_12069
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1150 bp 68.09 19.17 99.91
FFSP_062018_mid_0_1um_scaffold_3591
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
4 3349 bp 60.47 19.17 79.19
FFSP_062018_mid_0_1um_scaffold_10727
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1267 bp 57.77 19.18 76.72
FFSP_062018_mid_0_1um_scaffold_7686
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1673 bp 62.04 19.19 88.58
FFSP_062018_mid_0_1um_scaffold_6806
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1864 bp 62.18 19.23 77.25
FFSP_062018_mid_0_1um_scaffold_14317
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1006 bp 56.46 19.23 80.82
FFSP_062018_mid_0_1um_scaffold_4308
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (75%)
4 2826 bp 60.69 19.27 92.25
FFSP_062018_mid_0_1um_scaffold_9275
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1432 bp 64.94 19.27 99.93
FFSP_062018_mid_0_1um_scaffold_13670
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1042 bp 68.33 19.29 80.04
FFSP_062018_mid_0_1um_scaffold_3478
Order: Hydrogenophilales (60%)
5 3452 bp 60.69 19.29 92.12
FFSP_062018_mid_0_1um_scaffold_5179
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2394 bp 58.44 19.30 98.50
FFSP_062018_mid_0_1um_scaffold_9245
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1436 bp 62.67 19.32 99.86
FFSP_062018_mid_0_1um_scaffold_5283
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 2344 bp 65.91 19.33 94.58
FFSP_062018_mid_0_1um_scaffold_1562
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (87.5%)
8 6811 bp 60.74 19.34 95.98
FFSP_062018_mid_0_1um_scaffold_12113
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1147 bp 66.61 19.35 100.17
FFSP_062018_mid_0_1um_scaffold_4595
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2667 bp 65.62 19.35 95.28
FFSP_062018_mid_0_1um_scaffold_5123
Species: Thiobacillus denitrificans (100%)
3 2417 bp 66.28 19.36 99.67
FFSP_062018_mid_0_1um_scaffold_12431
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1123 bp 57.79 19.37 101.78
FFSP_062018_mid_0_1um_scaffold_10593
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1282 bp 60.61 19.42 100.39
FFSP_062018_mid_0_1um_scaffold_3195
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
9 3720 bp 59.68 19.44 81.94
FFSP_062018_mid_0_1um_scaffold_5868
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 2129 bp 60.97 19.45 99.34
FFSP_062018_mid_0_1um_scaffold_7313
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 1751 bp 68.13 19.45 99.89
FFSP_062018_mid_0_1um_scaffold_2627
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
6 4405 bp 61.25 19.48 87.58
FFSP_062018_mid_0_1um_scaffold_9529
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
2 1399 bp 64.62 19.51 85.13
FFSP_062018_mid_0_1um_scaffold_8964
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
2 1473 bp 62.86 19.55 85.54
FFSP_062018_mid_0_1um_scaffold_6781
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 1872 bp 65.54 19.55 99.84
FFSP_062018_mid_0_1um_scaffold_5392
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
4 2293 bp 59.31 19.56 93.68
FFSP_062018_mid_0_1um_scaffold_4520
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
1 2715 bp 65.60 19.56 99.89
FFSP_062018_mid_0_1um_scaffold_4544
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (66.67%)
3 2700 bp 62.93 19.56 91.78
FFSP_062018_mid_0_1um_scaffold_2007
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
8 5587 bp 62.56 19.57 96.65
FFSP_062018_mid_0_1um_scaffold_10256
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 1318 bp 56.45 19.58 94.92
FFSP_062018_mid_0_1um_scaffold_5262
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
4 2358 bp 60.52 19.59 90.71
FFSP_062018_mid_0_1um_scaffold_5317
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 2326 bp 61.31 19.60 98.67
FFSP_062018_mid_0_1um_scaffold_9483
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (100%)
3 1407 bp 63.26 19.62 99.36
Displaying items 151-200 of 800 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.