ggKbase home page

FFSP_072018_bottom_0_1um_scaffold_502

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_502_1
unknown

Not on your lists

206..478
DNA (273bp) protein (91aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_502_2
unknown

Not on your lists

comp(551..685)
DNA (135bp) protein (45aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_502_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1035..1424
DNA (390bp) protein (130aa)
cytochrome C n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000375F998
Cytochrome c5 {ECO:0000313|EMBL:GAD21551.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
class I cytochrome c
FFSP_072018_bottom_0_1um_scaffold_502_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1677..2252)
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037F405F
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2291..2758)
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D1759
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2764..3285)
DNA (522bp) protein (174aa)
NosL n=1 Tax=Thiobacillus denitrificans RepID=UPI0003738E3B
nitrous oxide reduction lipoprotein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3282..4073)
DNA (792bp) protein (264aa)
ABC transporter permease n=1 Tax=Thiobacillus thioparus RepID=UPI0003742648
ABC transporter transmembrane protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_8
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4083..5021)
DNA (939bp) protein (313aa)
ABC transporter related n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZN20_THASP
ABC transporter
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4993..6294)
DNA (1302bp) protein (434aa)
copper ABC transporter substrate-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036E7AD2
nitrous oxidase accessory protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_10
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6282..8930)
DNA (2649bp) protein (883aa)
FMN-binding protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000366CE6A
transmembrane regulatory nosR transcription regulator protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_11
BJP_IG2103_Rhodocyclales_63_50, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9066..10994)
DNA (1929bp) protein (643aa)
nitrous-oxide reductase (EC:1.7.99.6)
nitrous-oxide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037CF8D8
Tax=BJP_IG2103_Rhodocyclales_63_50
FFSP_072018_bottom_0_1um_scaffold_502_12
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11218..11502)
DNA (285bp) protein (95aa)
Phosphate/sulfate permease n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0H335_9GAMM
Phosphate/sulfate permease {ECO:0000313|EMBL:KHF25132.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
phosphate/sulfate permease
FFSP_072018_bottom_0_1um_scaffold_502_13
Solemya velum gill symbiont, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11499..12443)
DNA (945bp) protein (315aa)
Phosphate transporter n=1 Tax=Thauera sp. 28 RepID=N6YGU2_9RHOO
Phosphate/sulfate permease {ECO:0000313|EMBL:KHF25132.1}; TaxID=2340 species="Bacteria; Proteobacteria; Gammaproteobacteria; sulfur-oxidizing symbionts.;" source="Solemya velum gill symbiont.;"
phosphate/sulfate permease
FFSP_072018_bottom_0_1um_scaffold_502_14
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12767..13153)
DNA (387bp) protein (129aa)
Uncharacterized protein id=1347803 bin=GWE1_T_denit_62_9 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_15
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13182..15380)
DNA (2199bp) protein (733aa)
Heavy metal efflux pump, CzcA family id=1347804 bin=GWE1_T_denit_62_9 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
CzcA family heavy metal efflux pump
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15377..16228)
DNA (852bp) protein (284aa)
Heavy metal efflux pump, CzcA family id=1347804 bin=GWE1_T_denit_62_9 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
CzcA family heavy metal efflux pump
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_502_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16312..17883)
DNA (1572bp) protein (524aa)
Efflux transporter, RND family, MFP subunit id=1347805 bin=GWE1_T_denit_62_9 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RND family efflux transporter MFP subunit
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_502_18
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17880..19178)
DNA (1299bp) protein (433aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000377ED6F
outer membrane efflux protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19270..19650)
DNA (381bp) protein (127aa)
Putative uncharacterized protein id=1362751 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19747..21141)
DNA (1395bp) protein (465aa)
multi-sensor signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Thiobacillus thioparus RepID=UPI00036FC468
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_21
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21138..21830)
DNA (693bp) protein (231aa)
transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00037656E9
two component heavy metal response transcriptional regulator
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_502_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22058..23875
DNA (1818bp) protein (606aa)
Multi-Cu(II) oxidase CopA id=1351588 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
copper-resistance protein, CopA family protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_502_23
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24065..25012
DNA (948bp) protein (316aa)
Copper resistance protein B n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B6C0_9PROT
copper resistance protein B
Copper resistance protein B {ECO:0000313|EMBL:BAN36057.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
FFSP_072018_bottom_0_1um_scaffold_502_24
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25142..25777
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000379EA76
cytochrome c family protein
Cytochrome c family protein {ECO:0000313|EMBL:BAN36056.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
FFSP_072018_bottom_0_1um_scaffold_502_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25899..26339
DNA (441bp) protein (147aa)
Uncharacterized protein id=1362320 bin=GWE1_T_denit_62_9 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_502_26
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26351..26686
DNA (336bp) protein (112aa)
Conserved hypothetical secreted protein id=1351592 bin=GWE1_T_denit_62_9 species=Azoarcus sp. genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_502_27
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26717..27208
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI0003725B88
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_502_28
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27408..28412)
DNA (1005bp) protein (335aa)
hydrogenase expression protein HypE n=1 Tax=Thiobacillus thioparus RepID=UPI00037B8CF0
hydrogenase expression/formation protein HypE
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_502_29
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28421..30646)
DNA (2226bp) protein (742aa)
hydrogenase maturation protein HypF n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D68C2
Hydrogenase maturation protein HypF {ECO:0000313|EMBL:AAZ97338.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
hydrogenase maturation protein HypF
FFSP_072018_bottom_0_1um_scaffold_502_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30639..31751)
DNA (1113bp) protein (371aa)
hydrogenase assembly protein HupF n=1 Tax=Thiobacillus thioparus RepID=UPI0003674329
hydrogenase expression/formation protein HypD
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:AAZ97337.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying items 1-30 of 40 in total

View Taxonomy