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FFSP_072018_bottom_0_1um_scaffold_2320

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_2320_1
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..885)
DNA (885bp) protein (295aa)
Protease id=1342850 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
protease
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_2320_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(882..1262)
DNA (381bp) protein (127aa)
(2Fe-2S)-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036F4CD3
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_2320_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1241..1906)
DNA (666bp) protein (222aa)
Putative hydrolase id=1342848 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hydrolase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_2320_4
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1903..2865)
DNA (963bp) protein (321aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase id=1342847 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_2320_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3294..5357
DNA (2064bp) protein (688aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
RNAse E (EC:3.1.4.-)
ribonuclease E n=1 Tax=Thiobacillus thioparus RepID=UPI00036E0F99
FFSP_072018_bottom_0_1um_scaffold_2320_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5299..5697
DNA (399bp) protein (133aa)
RNAse E (EC:3.1.4.-)
Ribonuclease E and G id=1342846 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_2320_7
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5767..5898)
DNA (132bp) protein (44aa)
protein tyrosine phosphatase (EC:3.1.3.48)
Protein tyrosine phosphatase {ECO:0000313|EMBL:AAZ97518.1}; EC=3.1.3.48 {ECO:0000313|EMBL:AAZ97518.1};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
phosphotyrosine protein phosphatase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E7E42
FFSP_072018_bottom_0_1um_scaffold_2320_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6075..8102)
DNA (2028bp) protein (676aa)
excinuclease ABC subunit B n=1 Tax=Thiobacillus thioparus RepID=UPI0003794EB7
excinuclease ABC subunit B
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_2320_9
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8174..9367
DNA (1194bp) protein (398aa)
aminotransferase (EC:2.6.1.-)
aspartate aminotransferase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003626F22
Aspartate aminotransferase {ECO:0000313|EMBL:AAZ97522.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_2320_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9407..10687
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00036656BF
cyclic nucleotide-binding protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_2320_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10786..12003
DNA (1218bp) protein (406aa)
DNA-directed DNA polymerase id=1325887 bin=GWE1_T_denit_62_9 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
DNA-directed DNA polymerase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_2320_trna_1
unknown

Not on your lists

12043..12115
DNA (73bp)
transferRNA Asn
FFSP_072018_bottom_0_1um_scaffold_2320_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12266..12883
DNA (618bp) protein (206aa)
Probable site-specific integrase/recombinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIK4_THIDA
site-specific integrase/recombinase
Probable site-specific integrase/recombinase {ECO:0000313|EMBL:AAZ97524.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_2320_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12971..13408
DNA (438bp) protein (146aa)
Probable site-specific integrase/recombinase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SIK4_THIDA
site-specific integrase/recombinase
Probable site-specific integrase/recombinase {ECO:0000313|EMBL:AAZ97524.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_2320_14
unknown

Not on your lists

13529..13684
DNA (156bp) protein (52aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_2320_15
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13681..15327
DNA (1647bp) protein (549aa)
Putative site-specific recombinase n=1 Tax=Azoarcus sp. KH32C RepID=H0PYB9_9RHOO
putative site-specific recombinase
Putative site-specific recombinase {ECO:0000313|EMBL:BAL23461.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
FFSP_072018_bottom_0_1um_scaffold_2320_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15989..16096)
DNA (108bp) protein (36aa)
Integrase core domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLG7_VARPD
integrase core domain-containing protein
Integrase core domain-containing protein {ECO:0000313|EMBL:AGU53303.1}; Putative transposase {ECO:0000313|EMBL:AGU52980.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Displaying 17 items

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