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FFSP_072018_bottom_0_1um_scaffold_327

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_327_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..632)
DNA (630bp) protein (210aa)
CobW protein id=1328071 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
cobW protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_2
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(670..1086)
DNA (417bp) protein (139aa)
Transcriptional regulators, TraR/DksA family id=1328072 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
TraR/DksA family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_3
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1301..1837
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035E7A7F
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_4
unknown

Not on your lists

2390..2482
DNA (93bp) protein (31aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_327_5
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2491..5232)
DNA (2742bp) protein (914aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) id=1333626 bin=GWE1_T_denit_62_9 species=Nitrosococcus watsonii genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_6
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5367..6251)
DNA (885bp) protein (295aa)
Tyrosine recombinase XerC id=1333627 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
tyrosine recombinase XerC
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6259..6948)
DNA (690bp) protein (230aa)
Putative uncharacterized protein id=1333628 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6948..7796)
DNA (849bp) protein (283aa)
diaminopimelate epimerase (EC:5.1.1.7)
diaminopimelate epimerase n=1 Tax=Thiobacillus thioparus RepID=UPI000370DFB4
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7793..8221)
DNA (429bp) protein (143aa)
Putative uncharacterized protein id=1333630 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8218..8721)
DNA (504bp) protein (168aa)
Putative uncharacterized protein id=1333631 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8714..9628)
DNA (915bp) protein (305aa)
Lipid A biosynthesis lauroyl acyltransferase id=1333632 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
lipid A biosynthesis lauroyl acyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9625..10497)
DNA (873bp) protein (291aa)
Lipid A biosynthesis lauroyl acyltransferase id=1333633 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
lipid A biosynthesis lauroyl acyltransferase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_13
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10711..11877
DNA (1167bp) protein (389aa)
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase {ECO:0000255|HAMAP-Rule:MF_00086}; Short=AdoMet synthase {ECO:0000255|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000255|HAMAP-Rule:MF_00086};; MAT {ECO:0000255|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000255|HAMAP-Rule:MF_00086}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
S-adenosylmethionine synthase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=METK_THIDA
FFSP_072018_bottom_0_1um_scaffold_327_14
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11887..12954
DNA (1068bp) protein (356aa)
K+-dependent Na+/Ca+ exchanger related-protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SFY3_THIDA
K+-dependent Na+/Ca+ exchanger-like protein
K+-dependent Na+/Ca+ exchanger related-protein {ECO:0000313|EMBL:AAZ98473.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_327_15
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13335..14753
DNA (1419bp) protein (473aa)
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Thiobacillus thioparus RepID=UPI00036F4988
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14780..15127
DNA (348bp) protein (116aa)
membrane protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000372F929
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_327_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15131..15961
DNA (831bp) protein (277aa)
5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase id=1319876 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_18
unknown

Not on your lists

comp(15904..16161)
DNA (258bp) protein (86aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_327_19
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16227..16385
DNA (159bp) protein (53aa)
hypothetical protein id=12498658 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ98463.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_327_20
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16473..17249)
DNA (777bp) protein (259aa)
EAL domain-containing protein n=1 Tax=Cellvibrio sp. BR RepID=I3I469_9GAMM
hypothetical protein
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_327_21
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17353..18468)
DNA (1116bp) protein (372aa)
alanine-glyoxylate aminotransferase (EC:2.6.1.44)
Alanine-glyoxylate transaminase id=1319875 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_22
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18596..19351)
DNA (756bp) protein (252aa)
putative cell cycle control ATPase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA id=12498661 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
cell cycle control ATPase
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
FFSP_072018_bottom_0_1um_scaffold_327_23
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19348..21090)
DNA (1743bp) protein (581aa)
ATP-binding protein n=1 Tax=Thiobacillus thioparus RepID=UPI00038012FC
lipid A export ATP-binding/permease MsbA
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_24
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21087..22529)
DNA (1443bp) protein (481aa)
magnesium transporter n=1 Tax=Thiobacillus denitrificans RepID=UPI000379F089
divalent cation transporter
Tax=RBG_16_Gallionellales_57_15_curated
FFSP_072018_bottom_0_1um_scaffold_327_25
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22618..23319)
DNA (702bp) protein (234aa)
peptidoglycan transglycosylase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035F4369
mtgA; monofunctional biosynthetic peptidoglycan transglycosylase
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_26
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23316..24113)
DNA (798bp) protein (266aa)
shikimate dehydrogenase (EC:1.1.1.25)
shikimate 5-dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI0003661DB0
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_327_27
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24193..24648)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000362C4DC
rhodanese-like protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_327_28
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24923..26332
DNA (1410bp) protein (470aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase id=1319869 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_327_29
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26454..26921
DNA (468bp) protein (156aa)
Putative uncharacterized protein id=1319868 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_327_30
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27070..28161
DNA (1092bp) protein (364aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
histidine kinase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037075F6
Displaying items 1-30 of 33 in total

View Taxonomy