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FFSP_072018_bottom_0_1um_scaffold_767

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
FFSP_072018_bottom_0_1um_scaffold_767_1
unknown

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2..154
DNA (153bp) protein (51aa)

This feature has no annotations

FFSP_072018_bottom_0_1um_scaffold_767_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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151..633
DNA (483bp) protein (161aa)
Probable transmembrane protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW2_THIDA
transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:AAZ96660.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_767_3
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

703..900
DNA (198bp) protein (66aa)
Conserved hypothetical signal peptide protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW3_THIDA
signal peptide protein
Conserved hypothetical signal peptide protein {ECO:0000313|EMBL:AAZ96659.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_767_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

901..1920
DNA (1020bp) protein (340aa)
Conserved hypothetical signal peptide protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW3_THIDA
signal peptide protein
Conserved hypothetical signal peptide protein {ECO:0000313|EMBL:AAZ96659.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_767_5
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2255..2467
DNA (213bp) protein (71aa)
Bacterioferritin-associated ferredoxin n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW4_THIDA
bacterioferritin-associated ferredoxin
Bacterioferritin-associated ferredoxin {ECO:0000313|EMBL:AAZ96658.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_767_6
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2593..3072
DNA (480bp) protein (160aa)
Bacterioferritin n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW5_THIDA
bacterioferritin
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_767_7
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3090..3752
DNA (663bp) protein (221aa)
Putative uncharacterized protein id=1349958 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3755..3940
DNA (186bp) protein (62aa)
Putative isomerase id=1349959 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
isomerase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
FFSP_072018_bottom_0_1um_scaffold_767_9
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3944..5740
DNA (1797bp) protein (599aa)
UvrABC system protein C id=1349960 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
excinuclease ABC subunit C
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_10
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5872..6441
DNA (570bp) protein (190aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=1349961 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_trna_1
unknown

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6501..6573
DNA (73bp)
transferRNA Gly
FFSP_072018_bottom_0_1um_scaffold_767_trna_2
unknown

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6648..6718
DNA (71bp)
transferRNA Cys
FFSP_072018_bottom_0_1um_scaffold_767_trna_3
unknown

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6741..6824
DNA (84bp)
transferRNA Leu
FFSP_072018_bottom_0_1um_scaffold_767_11
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6944..7372
DNA (429bp) protein (143aa)
Ribosome maturation factor RimP id=1349962 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
hypothetical protein
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_12
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7391..8869
DNA (1479bp) protein (493aa)
peptidase M54 n=1 Tax=Thiobacillus thioparus RepID=UPI00037EA69E
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
FFSP_072018_bottom_0_1um_scaffold_767_13
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8879..11656
DNA (2778bp) protein (926aa)
Translation initiation factor IF-2 id=1349964 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
infB; translation initiation factor IF-2
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_14
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11775..12149
DNA (375bp) protein (125aa)
Ribosome-binding factor A id=1349965 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ribosome-binding factor A
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_15
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12146..13042
DNA (897bp) protein (299aa)
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B {ECO:0000255|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000255|HAMAP-Rule:MF_01080}; Short=Psi55 synthase {ECO:0000255|HAMAP-Rule:MF_01080};; tRNA pseudouridylate synthase {ECO:0000255|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000255|HAMAP-Rule:MF_01080}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
tRNA pseudouridine synthase B n=1 Tax=Thiobacillus denitrificans RepID=UPI00036D3574
FFSP_072018_bottom_0_1um_scaffold_767_16
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13131..13400
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Thiobacillus thioparus RepID=UPI0003762619
30S ribosomal protein S15
Tax=GWE1_Thiobacillus_62_9_curated
FFSP_072018_bottom_0_1um_scaffold_767_17
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13520..15100
DNA (1581bp) protein (527aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000255|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000255|HAMAP-Rule:MF_01595}; Short=PNPase {ECO:0000255|HAMAP-Rule:MF_01595};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
polynucleotide phosphorylase/polyadenylase n=1 Tax=Thiobacillus thioparus RepID=UPI00036D5EBA
polynucleotide phosphorylase
Displaying 20 items

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