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S0_scaffold_127_curated

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Displaying items 1-30 of 84 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
S0_scaffold_127_curated_1
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..92
DNA (90bp) protein (30aa)
Oxidoreductase FAD/NAD(P)-binding domain protein id=4189251 bin=GWF2_Geobacter_54_21 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
Sulfhydrogenase 1 subunit gamma {ECO:0000313|EMBL:GAM08471.1}; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
oxidoreductase FAD/NAD(P)-binding subunit
S0_scaffold_127_curated_2
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(219..713)
DNA (495bp) protein (165aa)
Protein-disulfide isomerase id=1868519 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
protein-disulfide isomerase
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_3
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(710..1876)
DNA (1167bp) protein (389aa)
Response regulator receiver sensor signal transduction histidine kinase id=1868520 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
response regulator receiver sensor signal transduction histidine kinase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_4
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1873..2589)
DNA (717bp) protein (239aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=1868521 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_5
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2586..4034)
DNA (1449bp) protein (483aa)
selenocysteine synthase (EC:2.9.1.1) rbh
L-seryl-tRNA(Sec) selenium transferase id=1868522 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_6
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4096..4779)
DNA (684bp) protein (228aa)
Transcriptional regulator, GntR family id=1868523 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
GntR family transcriptional regulator rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_7
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4999..6051
DNA (1053bp) protein (351aa)
TrkA-N domain protein id=1868524 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
TrkA domain-containing protein rbh
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_127_curated_8

Not on your lists

6044..6811
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZAA0_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKD34839.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
xylose isomerase domain-containing protein rbh
S0_scaffold_127_curated_9
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6887..7873
DNA (987bp) protein (329aa)
UDP-galactose 4-epimerase id=1868526 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
UDP-glucose 4-epimerase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_10
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7911..8063
DNA (153bp) protein (51aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AHN7_GEOSK
hypothetical protein
Lipoprotein, putative {ECO:0000313|EMBL:AAR34430.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
S0_scaffold_127_curated_11
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8275..9036
DNA (762bp) protein (254aa)
ABC-type phosphate transport system periplasmic component-like protein id=2221013 bin=GWB2_Pelobacter_53_15 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
phosphate ABC transporter substrate-binding protein
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_127_curated_12
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9138..11588
DNA (2451bp) protein (817aa)
Methyl-accepting chemotaxis sensory transducer id=4946031 bin=GWC2_Geobacteraceae_55_20 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
methyl-accepting chemotaxis sensory transducer rbh
Tax=GWC2_Geobacteraceae_58_44_curated
S0_scaffold_127_curated_13
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11697..13127)
DNA (1431bp) protein (477aa)
Diguanylate cyclase with PAS/PAC sensor id=3929077 bin=GWF2_Geobacter_54_21 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good rbh
diguanylate cyclase with PAS/PAC sensor rbh
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_127_curated_14
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13124..13567)
DNA (444bp) protein (148aa)
Response regulator receiver protein id=1735424 bin=GWD2_Desulfuromonadales_54_10 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
response regulator receiver protein
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_15
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13560..14738)
DNA (1179bp) protein (393aa)
PAS/PAC sensor signal transduction histidine kinase id=1735422 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
PAS/PAC sensor signal transduction histidine kinase
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_16
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14781..16100)
DNA (1320bp) protein (440aa)
Radical SAM domain protein id=1735420 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
radical SAM domain-containing protein rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_17
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16291..17085
DNA (795bp) protein (265aa)
Polysaccharide deacetylase id=1735416 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
polysaccharide deacetylase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_18
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17108..18067)
DNA (960bp) protein (320aa)
Signal peptide peptidase A, Serine peptidase, MEROPS family S49 id=1735412 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
signal peptide peptidase SppA, 36K type rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_19
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18273..19907)
DNA (1635bp) protein (545aa)
nitrite reductase (EC:1.7.2.2) rbh
Cytochrome c nitrite reductase id=1735410 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_20
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19925..20317)
DNA (393bp) protein (131aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein id=1735408 bin=GWD2_Desulfuromonadales_54_10 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
4Fe-4S ferredoxin
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_21
GWC2_Geobacteraceae_48_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20317..20622)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WK69_GEOS8
hypothetical protein
Tax=GWC2_Geobacteraceae_48_7_curated
S0_scaffold_127_curated_22
Geobacter pickeringii, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20662..22971)
DNA (2310bp) protein (770aa)
Periplasmic nitrate reductase, large subunit n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E655_GEOLS rbh
Nitrate reductase {ECO:0000313|EMBL:AJE02263.1}; TaxID=345632 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter pickeringii.;"
nitrate reductase
S0_scaffold_127_curated_23
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22997..23236)
DNA (240bp) protein (80aa)
NapD family protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WK73_GEOS8
NapD family protein
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_127_curated_24
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23543..24004
DNA (462bp) protein (154aa)
Redoxin domain protein id=4712445 bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
redoxin domain-containing protein
Tax=GWC2_Geobacteraceae_53_11_curated
S0_scaffold_127_curated_25
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24032..24619
DNA (588bp) protein (196aa)
Periplasmic protein YceI id=2102928 bin=GWB2_Geobacter-like_52_12 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWB2_Geobacteraceae_52_12_curated
S0_scaffold_127_curated_26
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24659..25111
DNA (453bp) protein (151aa)
Rubrerythrin id=4712446 bin=GWC2_Geobacteraceae_55_20 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
rubrerythrin
Tax=GWC2_Geobacteraceae_55_20_curated
S0_scaffold_127_curated_27
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25195..26496)
DNA (1302bp) protein (434aa)
Xanthine/uracil/vitamin C permease n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ATD0_PELPD rbh
xanthine/uracil/vitamin C permease rbh
Xanthine/uracil/vitamin C permease {ECO:0000313|EMBL:ABL00601.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
S0_scaffold_127_curated_28
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26499..27050)
DNA (552bp) protein (184aa)
Phosphoribosyltransferase id=1735402 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
hypoxanthine-guanine phosphoribosyltransferase
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_29
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27074..27976)
DNA (903bp) protein (301aa)
Release factor glutamine methyltransferase id=1973672 bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria rbh
HemK family modification methylase rbh
Tax=GWD2_Desulfuromonadales_54_10_curated
S0_scaffold_127_curated_30
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28326..29111
DNA (786bp) protein (262aa)
Putative uncharacterized protein id=2292022 bin=GWB2_Pelobacter_53_15 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABL00176.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
Displaying items 1-30 of 84 in total

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